View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_125 (Length: 259)
Name: NF1242_low_125
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_125 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 29570935 - 29570697
Alignment:
| Q |
21 |
acagagaaaacagagtaaatggatatagaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctct |
120 |
Q |
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| T |
29570935 |
acagagaaaacagagtaaatggatatagaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctct |
29570836 |
T |
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| Q |
121 |
ttttaggtctggccttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgcatgaattcatatcaatttttagaccaaggtc |
220 |
Q |
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| T |
29570835 |
ttttaggtctggccttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgcatgaattcatatcaatttttagaccaaggtc |
29570736 |
T |
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| Q |
221 |
aaagtattgaaaactttatactaaccacttcaattaaaa |
259 |
Q |
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| T |
29570735 |
aaagtattgaaaactttatactaaccacttcaattaaaa |
29570697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 44674082 - 44674026
Alignment:
| Q |
134 |
cttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgca |
190 |
Q |
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| T |
44674082 |
cttaggtaatttatccatctcaatctgcaactcttgccacatcttagcaagcctgca |
44674026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 33378814 - 33378670
Alignment:
| Q |
48 |
gaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctctttttaggtctggccttaggtaatttgt |
147 |
Q |
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| T |
33378814 |
gaaataacctgttcccaagttgagcatgaagatcaatcaccattttctcttcatattcagataaaagtcctctttttaaatctggcctcaagtaatttgt |
33378715 |
T |
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| Q |
148 |
ccatctcaatctgcaactttttccacaccttaacaaccctgcatg |
192 |
Q |
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| T |
33378714 |
ccatctaagtctacaactttttccacaccttaatagccctgcatg |
33378670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 3616471 - 3616412
Alignment:
| Q |
129 |
ctggccttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctg |
188 |
Q |
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| T |
3616471 |
ctggccttagataatttgtccatctaagtctgcaactcttactacaccttaacaaacctg |
3616412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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