View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_13 (Length: 554)

Name: NF1242_low_13
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_13
NF1242_low_13
[»] chr3 (27 HSPs)
chr3 (364-548)||(6510719-6510898)
chr3 (30-140)||(6750022-6750130)
chr3 (75-194)||(6950472-6950591)
chr3 (30-140)||(6471610-6471718)
chr3 (107-197)||(7576039-7576132)
chr3 (107-181)||(6551882-6551959)
chr3 (461-540)||(6749769-6749848)
chr3 (379-461)||(6822405-6822487)
chr3 (369-532)||(6418235-6418406)
chr3 (460-540)||(7575877-7575957)
chr3 (329-414)||(7575998-7576085)
chr3 (461-540)||(6471896-6471975)
chr3 (364-461)||(7588803-7588897)
chr3 (108-190)||(7588924-7589003)
chr3 (285-333)||(6822263-6822311)
chr3 (369-433)||(6471782-6471845)
chr3 (369-433)||(6749899-6749962)
chr3 (134-190)||(8473596-8473652)
chr3 (61-167)||(6510530-6510635)
chr3 (76-163)||(6822172-6822261)
chr3 (191-234)||(6551996-6552039)
chr3 (329-372)||(6822325-6822368)
chr3 (81-122)||(6584577-6584618)
chr3 (492-540)||(6823137-6823185)
chr3 (329-372)||(6418173-6418216)
chr3 (483-539)||(6552242-6552299)
chr3 (461-490)||(6823088-6823117)
[»] scaffold0445 (3 HSPs)
scaffold0445 (243-333)||(8988-9076)
scaffold0445 (377-532)||(8735-8878)
scaffold0445 (329-371)||(8927-8969)
[»] scaffold2089 (1 HSPs)
scaffold2089 (242-461)||(695-909)
[»] scaffold0425 (5 HSPs)
scaffold0425 (107-181)||(4832-4909)
scaffold0425 (369-461)||(5072-5161)
scaffold0425 (191-234)||(4946-4989)
scaffold0425 (35-82)||(3726-3773)
scaffold0425 (488-539)||(5217-5269)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 364 - 548
Target Start/End: Original strand, 6510719 - 6510898
Alignment:
Q  364 ctttctttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcattt 463  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||| ||| |||||||||||||  |    
T  6510719 ctttgtttgttccactcactttcaagtaatttctctctttaaatct---tactaaacacattttttactctttatttccgtttttactcaaatttca--t 6510813  T
Q  464 atattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgtttcatctcac 548  Q
    || |  | | |   |  | || ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  6510814 atttcacattttttttatactttatttccttggcagatctcagtttgtgtttttgtgacaaagatctcagtttgtttcttctcac 6510898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 6750130 - 6750022
Alignment:
Q  30 ggaaggtgccatctattgtgtggtgtggaggaaagacgcgtatacatgttcaatcagttgatccagaaaggtacattatctcattcattttctacttctt 129  Q
    ||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||  |||||||||||||||||||||||||||||    
T  6750130 ggaaggtgccatctattgtgtggtgtgtag-aaagacgcgtatatatgttcaatcagttgatacaaaaat-tacattatctcattcattttctacttctt 6750033  T
Q  130 actttctcttc 140  Q
    |||||||||||    
T  6750032 actttctcttc 6750022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 6950591 - 6950472
Alignment:
Q  75 atgttcaatcagttgatccagaaaggtacattatctcattcattttctacttcttactttctcttccataccaaacttcatctttcatatcttattctgc 174  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||||||| || ||||||| || |||    
T  6950591 atgttcaatcagttgatcaaaaaaggtacattatctcattcattttctacatcttattttctcttccatatgaaacttcatcattgatatcttgttgtgc 6950492  T
Q  175 ttcctctaagtatttctttg 194  Q
    |||||||||||  |||||||    
T  6950491 ttcctctaagtccttctttg 6950472  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 6471610 - 6471718
Alignment:
Q  30 ggaaggtgccatctattgtgtggtgtggaggaaagacgcgtatacatgttcaatcagttgatccagaaaggtacattatctcattcattttctacttctt 129  Q
    ||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||| || |||  | |||||||||||||||||||||||||||    
T  6471610 ggaaggtgccatctattgtgtggtgtgtag-aaagacgcgaatatatgttcaatcagttgatacaaaaat-tgcattatctcattcattttctacttctt 6471707  T
Q  130 actttctcttc 140  Q
    |||||||||||    
T  6471708 actttctcttc 6471718  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 7576132 - 7576039
Alignment:
Q  107 atctcattcattttctacttcttactttctcttccata---ccaaacttcatctttcatatcttattctgcttcctctaagtatttctttgttc 197  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||  | |||||||||||| | |||||||||||    
T  7576132 atctcattcattttctacatcttactttctcttccataataccaaacttcatctttcatatcttgctgtgcttcctctaactctttctttgttc 7576039  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 6551882 - 6551959
Alignment:
Q  107 atctcattcattttctacttcttactttctcttcc---ataccaaacttcatctttcatatcttattctgcttcctct 181  Q
    |||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |||||||    
T  6551882 atctcattgattttctacttcttactttctcttctttgataccaaacttcatctttcatatcttattctgtttcctct 6551959  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 461 - 540
Target Start/End: Complemental strand, 6749848 - 6749769
Alignment:
Q  461 tttatattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgttt 540  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||    
T  6749848 tttatattgcctctaaatatttttttatttccttggcagatctcagcttgtgtttttgagacaaagatctcaatttgttt 6749769  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 6822405 - 6822487
Alignment:
Q  379 tcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcat 461  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||| ||| | ||||||| ||||    
T  6822405 tcactttcaagtaatttctctctttgaatcttagtagtaaacacatattttactctaaatttccgtttttgctcaaatctcat 6822487  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 369 - 532
Target Start/End: Original strand, 6418235 - 6418406
Alignment:
Q  369 tttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttca-------- 460  Q
    ||||||| || |||||| |||||||||||||||||| ||||   ||||||||||| ||||||||||| |||||||||  |||||||||||||            
T  6418235 tttgttccacacactttaaagtaatttctctctttagatct---tagtaaacaca-tttttactcttaatttccattgttactcaaatttcatatttcac 6418330  T
Q  461 ----tttatattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctca 532  Q
        ||||||||||||||||||  |||||||||||||| |||||||| || ||||| |||  || |||||||||||    
T  6418331 atattttatattgcctctaaatagttctctatttccttggcagatctaagtttgtgctttactgtcaaagatctca 6418406  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 460 - 540
Target Start/End: Complemental strand, 7575957 - 7575877
Alignment:
Q  460 atttatattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgttt 540  Q
    |||| |||||||||||||||||||| |||||||||  |||||||||| || ||||||||| |||||||||||| |||||||    
T  7575957 atttttattgcctctaaatctttctatatttccttgtcagatctcagtttttgtttttgtcacaaagatctcaatttgttt 7575877  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 7576085 - 7575998
Alignment:
Q  329 ttcatcattgatatcttgcattgcttcctctaagtctttctttgttctactcactttcaagtaa--tttctctctttaaatcttagta 414  Q
    |||||| || |||||||||  |||||||||||| |||||||||||||||| |||||||||||||  | ||||||||||||||||||||    
T  7576085 ttcatctttcatatcttgctgtgcttcctctaactctttctttgttctacccactttcaagtaatctctctctctttaaatcttagta 7575998  T

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Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 461 - 540
Target Start/End: Original strand, 6471896 - 6471975
Alignment:
Q  461 tttatattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgttt 540  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||| ||||||| ||| ||||||||||||| |||||||    
T  6471896 tttatattgcctctaaatatttttttatttccttggcagatctcagcttgtgttcttgagacaaagatctcaatttgttt 6471975  T

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Target: chr3; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 364 - 461
Target Start/End: Complemental strand, 7588897 - 7588803
Alignment:
Q  364 ctttctttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcat 461  Q
    ||||| |||||| ||||||||||||||||||||||||||||||   || ||||| |||| |||||||||||| |||||| ||  ||||||||||||||    
T  7588897 ctttcattgttccactcactttcaagtaatttctctctttaaa---tattagtacacacgttttttactcttaatttccgttgttactcaaatttcat 7588803  T

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Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 7589003 - 7588924
Alignment:
Q  108 tctcattcattttcta-cttcttactttctcttccataccaaacttcatctttcatatcttattctgcttcctctaagtatttc 190  Q
    |||||||||||||||| |||||||||    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  7589003 tctcattcattttctaacttcttact----cttccataccaaacttcatctttgatatcttgttctgcttcctctaagtctttc 7588924  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 6822263 - 6822311
Alignment:
Q  285 cagttgatacaaaaaagcaaaccattcactttcttcttcttaatttcat 333  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6822263 cagttgatacaaaaaagcaaaccattcattttcttcttcttaatttcat 6822311  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 433
Target Start/End: Original strand, 6471782 - 6471845
Alignment:
Q  369 tttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactc 433  Q
    |||||||||| |||||||| |||||||||||||||||||| |  |||||||||||||||||||||    
T  6471782 tttgttctacacactttcatgtaatttctctctttaaatc-tcttagtaaacacattttttactc 6471845  T

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Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 433
Target Start/End: Complemental strand, 6749962 - 6749899
Alignment:
Q  369 tttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactc 433  Q
    |||||||||| |||||||| |||||||||||||||||||| |  |||||||||||||||||||||    
T  6749962 tttgttctacacactttcatgtaatttctctctttaaatc-tcttagtaaacacattttttactc 6749899  T

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Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 8473652 - 8473596
Alignment:
Q  134 tctcttccataccaaacttcatctttcatatcttattctgcttcctctaagtatttc 190  Q
    ||||||||||||||||||||||  || ||||||||||||||||||||||||| ||||    
T  8473652 tctcttccataccaaacttcatgattgatatcttattctgcttcctctaagtctttc 8473596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 6510530 - 6510635
Alignment:
Q  61 aaagacgcgtatacatgttcaatcagttgatccagaaaggtacattatctcattcattttctacttcttactttct-cttccataccaaacttcatcttt 159  Q
    |||||||||| || || |||||||||||||| || |||| || || |||||||||||||| | ||||| ||||||| |||  ||||||||||||||||||    
T  6510530 aaagacgcgt-tatatattcaatcagttgatacaaaaag-tatatcatctcattcattttttccttctcactttcttctttgataccaaacttcatcttt 6510627  T
Q  160 catatctt 167  Q
    ||||||||    
T  6510628 catatctt 6510635  T

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Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 6822172 - 6822261
Alignment:
Q  76 tgttcaatcagttgatccagaaaggtacattatctcattcattttctacttcttactttctcttc---cataccaaacttcatctttcata 163  Q
    |||||||||||||||| || |||| || || ||| |||||||||| ||||||| |||||||||||    ||||||||||||||||||||||    
T  6822172 tgttcaatcagttgatacaaaaag-taaatcatcgcattcattttttacttctcactttctcttctttgataccaaacttcatctttcata 6822261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 6551996 - 6552039
Alignment:
Q  191 tttgttccacttactatctatatcaaactcatcattgatatctt 234  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  6551996 tttgttccacttactatccatatgaaactcatcattgatatctt 6552039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 6822325 - 6822368
Alignment:
Q  329 ttcatcattgatatcttgcattgcttcctctaagtctttctttg 372  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  6822325 ttcatcattaatattttgcattgcttcctctaagtctttctttg 6822368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 6584577 - 6584618
Alignment:
Q  81 aatcagttgatccagaaaggtacattatctcattcattttct 122  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  6584577 aatcagttgatacaaaaaggtacattatctcattcattttct 6584618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 540
Target Start/End: Original strand, 6823137 - 6823185
Alignment:
Q  492 cttagcagatctcagattgtgtttttgtgacaaagatctcagtttgttt 540  Q
    ||||||||||||||| ||||||||||  |||||||||||||| ||||||    
T  6823137 cttagcagatctcagtttgtgtttttccgacaaagatctcagattgttt 6823185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 6418173 - 6418216
Alignment:
Q  329 ttcatcattgatatcttgcattgcttcctctaagtctttctttg 372  Q
    ||||||||||||||||||   |||||||||||||||||||||||    
T  6418173 ttcatcattgatatcttgttgtgcttcctctaagtctttctttg 6418216  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 6552242 - 6552299
Alignment:
Q  483 ctctatttccttagcagatctcagattgtgtttttg-tgacaaagatctcagtttgtt 539  Q
    |||| ||||||| ||||||||||| |||| ||| || |||||||||||||||||||||    
T  6552242 ctctctttccttggcagatctcagtttgtatttgtgctgacaaagatctcagtttgtt 6552299  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 490
Target Start/End: Original strand, 6823088 - 6823117
Alignment:
Q  461 tttatattgcctctaaatctttctctattt 490  Q
    ||||||||||||||||||||||||||||||    
T  6823088 tttatattgcctctaaatctttctctattt 6823117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 9076 - 8988
Alignment:
Q  243 tgtgcttcctctaaatctatccatattatatatatgctcagtcagttgatacaaaaaagcaaaccattcactttcttcttcttaatttcat 333  Q
    |||||||||||||| ||||||||||||||||||  | |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  9076 tgtgcttcctctaagtctatccatattatatat--ggtcagtcagttgatagaaaaaagcacaccattcattttcttcttcttaatttcat 8988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 377 - 532
Target Start/End: Complemental strand, 8878 - 8735
Alignment:
Q  377 actcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcatttatattgcctctaa 476  Q
    |||||||||||||||||||||||||||||||||    ||||||||||| |||||||||| |||||| ||  ||||||||||||    ||||| |    |     
T  8878 actcactttcaagtaatttctctctttaaatct---cagtaaacacatattttactcttaatttccgttgttactcaaatttc----atatttc----ac 8790  T
Q  477 atctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctca 532  Q
    || ||| | ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  8789 at-tttttatatttccttggcagatctcagtttgtgtttttgtgacaaagatctca 8735  T

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Target: scaffold0445; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 8969 - 8927
Alignment:
Q  329 ttcatcattgatatcttgcattgcttcctctaagtctttcttt 371  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  8969 ttcatcgttgatatcttgcattgcttccgctaagtctttcttt 8927  T

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Target: scaffold2089 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 242 - 461
Target Start/End: Original strand, 695 - 909
Alignment:
Q  242 ttgtgcttcctctaaatctatccatattatatatatgctcagtcagttgatacaaaaaagcaaaccattcactttcttcttcttaatttcatcattgata 341  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||||||||              || | ||||||||||||||||||||||||||||    
T  695 ttgtgcttcctctaagtctatccatattatatat--gctcagtcagttgatacc-------------ttgattttcttcttcttaatttcatcattgata 779  T
Q  342 tcttgcattgcttcctctaagtctttcttt--------------gttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacatttt 427  Q
    ||||| ||||||||||||||||||||||||              |||||||||||||||||||||||| ||| ||||| |||   || ||||||||||||    
T  780 tcttggattgcttcctctaagtctttctttgccagatctttcaagttctactcactttcaagtaatttttct-tttaagtct---taataaacacatttt 875  T
Q  428 ttactctttatttccatttgtactcaaatttcat 461  Q
    |||||||| |||| | ||  ||||||||||||||    
T  876 ttactcttaatttacgttgttactcaaatttcat 909  T

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Target: scaffold0425 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 4832 - 4909
Alignment:
Q  107 atctcattcattttctacttcttactttctcttcc---ataccaaacttcatctttcatatcttattctgcttcctct 181  Q
    |||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||| |||||||    
T  4832 atctcattgattttctacttcttactttctcttctttgataccaaacttcatctttcatatattattctgtttcctct 4909  T

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Target: scaffold0425; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 461
Target Start/End: Original strand, 5072 - 5161
Alignment:
Q  369 tttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcat 461  Q
    ||||||| || ||||||||||||| || |||||||||||||||||   ||||||||||||||||||| |||||| ||  ||||||||||||||    
T  5072 tttgttccacacactttcaagtaacttatctctttaaatcttagt---aaacacattttttactcttaatttccgttgttactcaaatttcat 5161  T

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Target: scaffold0425; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 4946 - 4989
Alignment:
Q  191 tttgttccacttactatctatatcaaactcatcattgatatctt 234  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  4946 tttgttccacttactatccatatgaaactcatcattgatatctt 4989  T

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Target: scaffold0425; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 3726 - 3773
Alignment:
Q  35 gtgccatctattgtgtggtgtggaggaaagacgcgtatacatgttcaa 82  Q
    |||| |||||||| ||||||||||||||| ||||||||||| ||||||    
T  3726 gtgctatctattgggtggtgtggaggaaaaacgcgtatacaagttcaa 3773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 5217 - 5269
Alignment:
Q  488 tttccttagcagatctcagattgtgtttttg-tgacaaagatctcagtttgtt 539  Q
    ||||||| ||||||||||| |||| ||| || |||||||||||||||||||||    
T  5217 tttccttggcagatctcagtttgtatttgtggtgacaaagatctcagtttgtt 5269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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