View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_131 (Length: 255)
Name: NF1242_low_131
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_131 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 55615855 - 55615922
Alignment:
| Q |
188 |
gcaaaggtaaacagtaagtaaataattaccagcatcaaatcctctttcccgcaagcgtgacatcacca |
255 |
Q |
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| T |
55615855 |
gcaaaggtaaacagtaagtaaataattaccagcatcaaatcctctttcccgcaagcgtgacatcacca |
55615922 |
T |
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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 55623159 - 55623226
Alignment:
| Q |
188 |
gcaaaggtaaacagtaagtaaataattaccagcatcaaatcctctttcccgcaagcgtgacatcacca |
255 |
Q |
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| T |
55623159 |
gcaaaggtaaacagtaagtaaataattaccagcatcaaatcctctttcccgcaagcgtgacatcacca |
55623226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 55630290 - 55630319
Alignment:
| Q |
18 |
gaacatcaagacaaatcccatgacttgaat |
47 |
Q |
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| T |
55630290 |
gaacatcaagacaaatcccatgacttgaat |
55630319 |
T |
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