View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_133 (Length: 253)
Name: NF1242_low_133
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_133 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 23523724 - 23523933
Alignment:
| Q |
20 |
tttgaagtatagtaatattgacattcaattacaactctaa-gaaagaagaagaaaaattgataaaaaatgaacattaatttagcatatatttaaagttaa |
118 |
Q |
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| T |
23523724 |
tttgaagtatagtaatattgacattcaattacaactctaaagaaagaagaaaaaaaattgataaaaaatgaacattaatttagcatatatttaaagttaa |
23523823 |
T |
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| Q |
119 |
tattttttaggaagggataaccagtgaatggaagcaaattaagatagggtaatattcttacggtgatatatggtttgacttctagtcatccttcttgtca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23523824 |
tattttttaggaagggataaccagtgaatggaagcaaattaagatagggtaatattcttacggtgatatatggtttgacttctagtcatccttgttgtca |
23523923 |
T |
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| Q |
219 |
tcaaccttgt |
228 |
Q |
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|||||||||| |
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| T |
23523924 |
tcaaccttgt |
23523933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 23517877 - 23517918
Alignment:
| Q |
32 |
taatattgacattcaattacaactctaagaaagaagaagaaaaa |
75 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23517877 |
taatattgacattcaattacaactcta--aaagaagaagaaaaa |
23517918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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