View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1242_low_134 (Length: 252)
Name: NF1242_low_134
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_134 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48989038 - 48988801
Alignment:
| Q |
1 |
ggttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
48989038 |
ggttaagtcaccatgtatggtaatgaaaagcaaaattaggatgattggccttcaaccaccagaatgattgttttttaatt--gtctaaaagttaactaat |
48988941 |
T |
|
| Q |
101 |
agtattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagtagaaggaagatgaaaagatattt |
200 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
48988940 |
agtatttcccttttgttggaagactctagagttcctgtcacgctagataatctaaatacaagagagccaaatcaagtagaaggaagaggaaaagatattt |
48988841 |
T |
|
| Q |
201 |
gagaagccgcccaacaatcgaaattgaataatgtgttcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48988840 |
gagaagccgcccaacaatcgaaattgaataatgtgttcat |
48988801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 55416999 - 55416795
Alignment:
| Q |
3 |
ttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaatag |
102 |
Q |
| |
|
||||| |||||||| ||||||| ||||| ||||||||||||||| | ||||||||||||||| ||||| |||||||| ||| ||| | | |||| |
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|
| T |
55416999 |
ttaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccttcaaccaccagaagaattgtagcttaattttatctataagctgatgaataa |
55416900 |
T |
|
| Q |
103 |
tattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagtagaaggaagatgaaaagatatttga |
202 |
Q |
| |
|
||| ||||||||||||||| |||| ||| ||||| || | | ||||||| |||||| |||||||||||||||||| | ||| |||| ||| ||| | |
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|
| T |
55416899 |
aattttctttttgttggaagactatagaattcatgtcatgccaaacaatccaagtacaagtgagccaaatcaagtagaaagtagaagaaatgatttttca |
55416800 |
T |
|
| Q |
203 |
gaagc |
207 |
Q |
| |
|
||||| |
|
|
| T |
55416799 |
gaagc |
55416795 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 26698163 - 26698114
Alignment:
| Q |
21 |
taatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattg |
70 |
Q |
| |
|
|||| ||||| ||||||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
26698163 |
taattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattg |
26698114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 48825370 - 48825438
Alignment:
| Q |
18 |
tggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtct |
86 |
Q |
| |
|
||||||| |||| ||||||||||||||| | |||||||||||| || |||||| |||||||||||| |
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|
| T |
48825370 |
tggtaattaaaaacaaaattaggatgatttgccttcaaccaccaaaaagattgtaccttaattttgtct |
48825438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 9493807 - 9493586
Alignment:
| Q |
17 |
atggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaatagtattccacttttgt |
116 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| || |||||||| ||||| |||||| || ||||||| | |||||| | |||||||||| | ||||||| |
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|
| T |
9493807 |
atggtaatgaaaagcaaaattaggataatttgttttcaaccatcagaaggattgtagctttattttgtttaaaagttcattaatagtatttcccttttgt |
9493708 |
T |
|
| Q |
117 |
tggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagtagaaggaagatgaaaagatatttgagaagccgcccaaca |
216 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||| | || |||||||| ||||| |
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|
| T |
9493707 |
tggaagactctagagttcccgtcacgccaaataatccaaatacaagatagccaaatcaagtagaaggaagcggaaaaggttttcgagaagcc-accaacg |
9493609 |
T |
|
| Q |
217 |
atcgaaattgaataatgtgttca |
239 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9493608 |
atcgaaattgaataatgtgttca |
9493586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 9145708 - 9145531
Alignment:
| Q |
3 |
ttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaatag |
102 |
Q |
| |
|
||||| |||||| | || |||| ||||| ||||||||| ||||| | |||||||||||| || ||||| |||||||| ||| ||| | | |||||| |
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|
| T |
9145708 |
ttaagccaccatttgtgctaattaaaagcaaaattagggtgatttgccttcaaccaccaaaaagattggagcttaattttatctagaagctgattaatag |
9145609 |
T |
|
| Q |
103 |
tattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagtaga |
180 |
Q |
| |
|
||||| | |||||||||||||||| || ||| |||||||| | | ||| |||| |||||||||||| |||||||||| |
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|
| T |
9145608 |
aattccccgtttgttggaagactctggaattcttgtcacgccaaacaattcaaacacaagagagccatatcaagtaga |
9145531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 26159687 - 26159832
Alignment:
| Q |
26 |
aaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaatagtattccacttttgttggaagact |
125 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||| |||| ||||| |||||||| ||| ||||| | | || | ||| ||||||||| || ||| |
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|
| T |
26159687 |
aaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaattttatctataagttgaattattgaattgaccttttgttgaaa-act |
26159785 |
T |
|
| Q |
126 |
ctagagttcctgtcacgctagataatccaaatacaagagagccaaat |
172 |
Q |
| |
|
|||| |||||||||||| |||||||||||| |||||| |||||||| |
|
|
| T |
26159786 |
ctagcattcctgtcacgccagataatccaaacacaagaaagccaaat |
26159832 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 19120364 - 19120534
Alignment:
| Q |
75 |
ttaattttgtctgaaagttaactaatagtattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatca |
174 |
Q |
| |
|
|||||||||||| || || | ||||||||||| ||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||| |
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|
| T |
19120364 |
ttaattttgtctagaatttgattaatagtattctccttttgttgcaagactctagagttcctatcacgtaaaataatccaaatacaagagagccaaatca |
19120463 |
T |
|
| Q |
175 |
agtagaaggaagatgaaaag-----atatttgagaagccgcccaacaatcgaaattgaataatgtgttcat |
240 |
Q |
| |
|
||||||||||||| |||| | | ||||||||||| ||||| |||| ||||||| ||||||||||| |
|
|
| T |
19120464 |
agtagaaggaagaggaaatggttttaattttgagaagccacccaatgatcggaattgaagaatgtgttcat |
19120534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 13318049 - 13318224
Alignment:
| Q |
3 |
ttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaatag |
102 |
Q |
| |
|
||||| |||||||| ||||||| ||||| ||||||||||||||| | | || ||||||||||||||||| |||||||||||| ||| | | ||||| |
|
|
| T |
13318049 |
ttaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccaccagccaccagaatgattgttgcttaattttgtctttaagctgatgaatag |
13318148 |
T |
|
| Q |
103 |
tattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaagta |
178 |
Q |
| |
|
||| | ||||||||||||||||||| |||| |||||| ||| | | || |||||||||||| |||||||||||| |
|
|
| T |
13318149 |
aatttccattttgttggaagactctagtgttcttgtcacactaaacagtcaaaatacaagagatccaaatcaagta |
13318224 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 175
Target Start/End: Complemental strand, 52243516 - 52243344
Alignment:
| Q |
3 |
ttaagtcaccatgtatggtaatgaaaagtaaaattaggatgattggtcttcaaccaccagaatgattgttttttaattttgtctgaaagttaactaatag |
102 |
Q |
| |
|
|||||| ||||||| ||||||| ||| ||||||||||||||||| | ||||| ||||||||| ||||| ||||||||||| ||| | | |||||| |
|
|
| T |
52243516 |
ttaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccaccagaaggattggagcttaattttgtccacaagctgattaatag |
52243417 |
T |
|
| Q |
103 |
tattccacttttgttggaagactctagagttcctgtcacgctagataatccaaatacaagagagccaaatcaa |
175 |
Q |
| |
|
| || |||||||||||| ||||||| ||| |||| ||| | ||| | |||| |||||| ||| ||||||| |
|
|
| T |
52243416 |
aaagccccttttgttggaaaactctagcattcatgtcgcgccaaatagttcaaacacaagaaagctaaatcaa |
52243344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 513518 - 513550
Alignment:
| Q |
111 |
ttttgttggaagactctagagttcctgtcacgc |
143 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
513518 |
ttttgttggaagactctagagttccggtcacgc |
513550 |
T |
|
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