View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_14 (Length: 528)
Name: NF1242_low_14
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 11 - 499
Target Start/End: Original strand, 50558383 - 50558871
Alignment:
| Q |
11 |
cacagaaacatagagcaaaaatttagggagagggttgctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcatt |
110 |
Q |
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| T |
50558383 |
cacagaaacatagagcaaaaatttagggagagggttgctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcatt |
50558482 |
T |
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| Q |
111 |
ggtcacctcgtgcagaaccatactcacacccaggagttggacaggcaccttccacaagccgatcacacaagaacctctcgcatgtattgcagtaaagctg |
210 |
Q |
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| T |
50558483 |
ggtcacctcgtgcagaaccatactcacactcaggagttggacaggtaccttccacaagccgatcacacaagaacctctcgcaggtatcgcagtaaagctg |
50558582 |
T |
|
| Q |
211 |
aaatttgataagcattttagtaaagcgtaataaagaacctttctgaaattttcaactaaacaagagagaggaacaatgtcaaataaatagaaaattgaac |
310 |
Q |
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| T |
50558583 |
aaatttgataagcattttagtaaagtgtaataaagaacctttctgaaattttcaactaaacaagagagaggaacaatgtcaaataaatagaaaattgaac |
50558682 |
T |
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| Q |
311 |
acctgctccattgttctctcggagatccatttgttatcaaatatcttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaa |
410 |
Q |
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| T |
50558683 |
acctgctccattgttctctcggagatccatttgttatcaaatatcttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaa |
50558782 |
T |
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| Q |
411 |
atttatcaaaacttatatcaaaccaatcatagacctccttatgaatagcatggtatctacacaaaaacaccgagaaaagacgattattg |
499 |
Q |
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| T |
50558783 |
atttatcaaaacttatatcaaaccaatcgtagacctccttatgaatagcatggtatctacacaaaaaaaccgagaaaagacgattattg |
50558871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 469
Target Start/End: Original strand, 29773425 - 29773538
Alignment:
| Q |
356 |
ttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaaatttatcaaaacttatatcaaaccaatcatagacctccttatgaa |
455 |
Q |
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|||| |||||||| ||||| | ||||||||||||||| ||||| || || ||||||| |||||| ||||||| |||||||| ||||| ||||| |||| |
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| T |
29773425 |
tttttgaaaattgcttggcacacttcagtttgctcaggggaagaagtacgtccaaattcatcaaagcttatattgaaccaatcgtagacttccttgtgaa |
29773524 |
T |
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| Q |
456 |
tagcatggtatcta |
469 |
Q |
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| T |
29773525 |
tagcatggtatcta |
29773538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 48 - 216
Target Start/End: Original strand, 29773068 - 29773236
Alignment:
| Q |
48 |
ctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacctcgtgcagaaccatactcacacccaggagt |
147 |
Q |
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| T |
29773068 |
ctaccttgcacttgggaatcttcaattctgtcggatttagaaggttgccacagttctcacactgatcccctctggcagaatcatactcacaccctggaat |
29773167 |
T |
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| Q |
148 |
tggacaggcaccttccacaagccgatcacacaagaacctctcgcatgtattgcagtaaagctgaaattt |
216 |
Q |
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||| |||| ||| |||||||| ||||| |||||||| | |||||||| |||||||||||||||||| |
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| T |
29773168 |
tgggcaggtaccctccacaagtcgatcggctaagaaccttttgcatgtatcgcagtaaagctgaaattt |
29773236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 391
Target Start/End: Original strand, 50568978 - 50569065
Alignment:
| Q |
306 |
tgaacacctgctccattgttctctcggagatccatttgttatcaaa--tatcttttggaaaattgactggcaaatttcagtttgctca |
391 |
Q |
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| T |
50568978 |
tgaacacctgctccacggttctctcggatagccatttgttatcaaatttatctttttgaaaatttccttgcaaacttcagttagctca |
50569065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 476
Target Start/End: Original strand, 50569071 - 50569104
Alignment:
| Q |
443 |
acctccttatgaatagcatggtatctacacaaaa |
476 |
Q |
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| T |
50569071 |
acctccttattaatagcatggtatctacacaaaa |
50569104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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