View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_140 (Length: 251)
Name: NF1242_low_140
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_140 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 24168618 - 24168772
Alignment:
| Q |
22 |
atgccactcccgttaacggcgtttccaccacagacattatcgttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagt |
121 |
Q |
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| T |
24168618 |
atgccactcccgttaacggtgtttccatcaaagacattaccgttaactccgaaaataacgtttggttccgtctctttacacccactgttggcggagaagt |
24168717 |
T |
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| Q |
122 |
cgtcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcatattcttc |
176 |
Q |
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| T |
24168718 |
cgtcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcattttcttc |
24168772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 24179056 - 24179208
Alignment:
| Q |
24 |
gccactcccgttaacggcgtttccaccacagacattatcgttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcg |
123 |
Q |
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| T |
24179056 |
gccactcctgttaacggcgtttccaccaaagacgttaccgttaacgccgaaaataacgtttggtttcgtctctttacccccactgttgccggagaagtca |
24179155 |
T |
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| Q |
124 |
tcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcatattcttc |
176 |
Q |
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| T |
24179156 |
ccggagatggtggtgccaccaaagcaacctcccttcctgtcgtcattttcttc |
24179208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 24188862 - 24189014
Alignment:
| Q |
24 |
gccactcccgttaacggcgtttccaccacagacattatcgttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcg |
123 |
Q |
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| T |
24188862 |
gccactccgattaacggcgtttccactaaagacgtcaccgttaactccgaaaacaacctttggttccgtctctttactccaactgttgccggagaagtca |
24188961 |
T |
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| Q |
124 |
tcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcatattcttc |
176 |
Q |
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| T |
24188962 |
ccgaagatggtggttccaccaaaactacctcccttcccgtcgtcattttcttc |
24189014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 24151782 - 24151863
Alignment:
| Q |
25 |
ccactcccgttaacggcgtttccaccacagacattatcgttaactccgaaaataatgtttggttccgtctctttacacccac |
106 |
Q |
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| T |
24151782 |
ccactcccgttaacggcgtttccaccaaagacattaccgttaacaccgaaaataacgtttggtttcgtctcttcactcccac |
24151863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 24112511 - 24112584
Alignment:
| Q |
33 |
gttaacggcgtttccaccacagacattatcgttaactccgaaaataatgtttggttccgtctctttacacccac |
106 |
Q |
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| T |
24112511 |
gttaacggcgtttccaccaaagacgttatcgttaacgcagaagataacgtttggttccgtctcttcacacccac |
24112584 |
T |
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