View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_141 (Length: 251)
Name: NF1242_low_141
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_141 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 26217996 - 26217753
Alignment:
| Q |
8 |
ccaagaatataagaattagaatctttcatcggtgatgtgatattcctactacgctatatttctaacttttgaaaattgattgactggcctgacatgtctt |
107 |
Q |
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| T |
26217996 |
ccaagaatgtaagaattagaatctttcaccggtgatgtgatattcctactatgctatatttttaacttttgaaaattgattgactggcctgacatgtctt |
26217897 |
T |
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| Q |
108 |
cttaagttttaaaaatattttgcatcactcaagcttcaccctatgttgctttnnnnnnnttaaaagtagtaatctacaaatagaagatgagagataatta |
207 |
Q |
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| T |
26217896 |
cttaagttttaaaaatattttgcatcactcaagcttcaccctatgttgctttaaaaaaattaaaagtagtaatctacaaatagaagatgagagataatta |
26217797 |
T |
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| Q |
208 |
gatcattagtacatatttagactccgtgaatttctcctttctaa |
251 |
Q |
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| T |
26217796 |
gatcattagtacatatttagactccgtgaatttctcctttctaa |
26217753 |
T |
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