View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_143 (Length: 251)
Name: NF1242_low_143
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_143 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7705239 - 7705476
Alignment:
| Q |
1 |
caaaacaaattcatagtatgagcacaagataagcaggaagtaaaatagttctgcagaaacctatatatgtagattgacacttgacatcaaatgtgtgttt |
100 |
Q |
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| T |
7705239 |
caaaacaaattcatagtatgagcacaagataagcaggaagtaaaatagttctgcagaaacctatatatgtagattgacacttgacataaaatgtgtgttt |
7705338 |
T |
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| Q |
101 |
aatcataatatgcaccttttatgaaggtcccagcaaatagcttcatataagctcaaagacatatttatcagtttcatataaatattcatttggttctaca |
200 |
Q |
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| T |
7705339 |
aatcataatatgcaccttttatgaaggtcccagcaaatagctttatataagctcaaagacatatttatcagtttcatataaatattcattt-gttctaca |
7705437 |
T |
|
| Q |
201 |
atgtgtccagcgaccgacaaattcaattctgcagattcat |
240 |
Q |
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||| ||||||||||||| |||||||||||||||||||||| |
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| T |
7705438 |
atg-gtccagcgaccgaaaaattcaattctgcagattcat |
7705476 |
T |
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