View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_145 (Length: 250)
Name: NF1242_low_145
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_145 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 55641075 - 55640842
Alignment:
| Q |
4 |
ctaaagatctattgtccgtttcaaatataacttaatgcataccaatgaaaattgccatcttcatagcttctagcaatccaatggttcccacttcaagaac |
103 |
Q |
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| T |
55641075 |
ctaaagatctattgtccgtttcaaatataacttcatgcataccattgaaaattgccatcttcatagcttctagcaatccaatggttcccacttcaagaac |
55640976 |
T |
|
| Q |
104 |
aatagcggaaattcgcaagtaatctgatttaccaagtaaaagttgtcccagtgaatctctaaagcacataccataccctaaggttgaattgttattgaaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55640975 |
aatagcggaaattcgcaagtaatctgatttaccaagtaaaagttgccccagtgaatctctaaagcacataccataccctaaggttgaattgttattgaaa |
55640876 |
T |
|
| Q |
204 |
acattttgtatatgcgtggtttctttttgttgcc |
237 |
Q |
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| T |
55640875 |
acattttgtatatgcgtgttttctttttgttgcc |
55640842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 42661440 - 42661238
Alignment:
| Q |
1 |
ttactaaagatctattgtccgtttcaaatataacttaatgcataccaatgaaaattgccatcttcatagcttctagcaatccaatggttcccacttcaag |
100 |
Q |
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|||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
42661440 |
ttactaaagatctagtgtccgtt-caaatataacttcatgcataccattgaaaattgccatctttatagcttctagcaatccaatggtttccacttcaag |
42661342 |
T |
|
| Q |
101 |
aacaatagcggaaattcgcaagtaatctgatttaccaagtaaaagttgtcccagtgaatctctaaagcacataccataccctaaggttgaattgttattg |
200 |
Q |
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| T |
42661341 |
aacaatagcgaaaattcgcaagtaatttgatttaccaagtaaaaattgccccaatgaatctctaaagcacataccataccctaaggttgaattgttaatg |
42661242 |
T |
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| Q |
201 |
aaaa |
204 |
Q |
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|||| |
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| T |
42661241 |
aaaa |
42661238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 34297628 - 34297810
Alignment:
| Q |
3 |
actaaagatctattgtccgtttcaaatataacttaatgcataccaatgaaaattgccatcttcatagcttctagcaatccaatggttcccacttcaagaa |
102 |
Q |
| |
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|||||||||||| |||| |||||||| ||||| | |||||||||| |||||| |||||||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
34297628 |
actaaagatctactgtcagtttcaaagataacatcatgcataccattgaaaactgccatcttcatttcttctagccatccaatggtttccacttcaagaa |
34297727 |
T |
|
| Q |
103 |
caatagcggaaattcgcaagtaatctgatttaccaagtaaaagttgtcccagtgaatctctaaagcacataccataccctaag |
185 |
Q |
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| T |
34297728 |
cagtagcggaaatttgcaagtaatatgattttccaagtaaaaactgtcttagtgaatctctaaagcacataccatatcctaag |
34297810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 2333541 - 2333344
Alignment:
| Q |
9 |
gatctattgtccgtttcaaatataacttaatgcataccaatgaaaattgccatcttcatagcttctagcaatccaatggttcccacttcaagaacaatag |
108 |
Q |
| |
|
|||||| |||| |||||||||||||| | |||||| ||| || | |||||||||| |||||||||||||| ||||||||| |||| | ||||| | ||| |
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| T |
2333541 |
gatctactgtcagtttcaaatataacattatgcatgccattggagattgccatctccatagcttctagcagcccaatggtttccaccttaagaatagtag |
2333442 |
T |
|
| Q |
109 |
cggaaattcgcaagtaatctgatttaccaagtaaaagttgtcccagtgaatctctaaagcacataccataccctaaggttgaattgttattgaaaaca |
206 |
Q |
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| ||| || ||| |||||||||||| |||||||||| || |||| |||||||| |||||||||||||||||||| | |||||||| ||||||||| |
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| T |
2333441 |
cagaattttgcatgtaatctgatttttcaagtaaaagctgccccaatgaatctcgaaagcacataccataccctaccatggaattgttgttgaaaaca |
2333344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 17401009 - 17401069
Alignment:
| Q |
123 |
taatctgatttaccaagtaaaagttgtcccagtgaatctctaaagcacataccatacccta |
183 |
Q |
| |
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||||||||||| |||||||||| || || | |||||||| ||||||||||||||||||| |
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| T |
17401009 |
taatctgattttacaagtaaaagctgcccgaatgaatctcggaagcacataccatacccta |
17401069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 14436042 - 14436199
Alignment:
| Q |
21 |
gtttcaaatataacttaatgcataccaatgaaaattgccatcttcatagcttctagcaatccaatggttcccacttcaagaacaatagcggaaattcgca |
120 |
Q |
| |
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|||||||||||||| | ||||| |||| || | |||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||| ||| |
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| T |
14436042 |
gtttcaaatataacattatgcacaccattggagattgtcatcttcatagcttctagcaacccaatggtttccacttcaagaacagtagcagaaatttgca |
14436141 |
T |
|
| Q |
121 |
agtaatctgatttaccaagtaaaagttgtcccagtgaatctctaaagcacataccata |
178 |
Q |
| |
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|||||| |||||| |||||||||| ||| |||| |||||||| ||||||||||||||| |
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| T |
14436142 |
agtaatatgattttccaagtaaaatttgccccaatgaatctcgaaagcacataccata |
14436199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 30928056 - 30927950
Alignment:
| Q |
54 |
attgccatcttcatagcttctagcaatccaatggttcccacttcaagaacaatagcggaaattcgcaagtaatctgatttaccaagtaaaagttgtccca |
153 |
Q |
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||||||||||||||||||||||||| ||||| ||| ||||||||||| | |||| |||| | ||| ||||| |||||| ||||||||||| || || | |
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| T |
30928056 |
attgccatcttcatagcttctagcagcccaatagtttccacttcaaga--agtagcagaaaattgcatgtaatatgattttccaagtaaaagctgcccta |
30927959 |
T |
|
| Q |
154 |
gtgaatctc |
162 |
Q |
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|||||||| |
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|
| T |
30927958 |
atgaatctc |
30927950 |
T |
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