View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_146 (Length: 250)
Name: NF1242_low_146
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_146 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 42177471 - 42177263
Alignment:
| Q |
17 |
tttacaaagtgttgtttctcattggacataatcatagatatgt-------ggctaataaatatgtagtttcttcagcaaaaaatcttttttcttcaaaat |
109 |
Q |
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| T |
42177471 |
tttacaaagtgttgtttctcattggacataatcatatatatgtaatatgtggctaataaatatgtagtttcttcagcaaaaaatcttttttcttcaaaat |
42177372 |
T |
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| Q |
110 |
gttgtttatcaacatatggaagtattgtaaatctcgagtggatagcatggaagtattgttcatttaattcaacattaaggtttcaatac--gtaaggtag |
207 |
Q |
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| T |
42177371 |
gttgtttatcaacatatggaagtattgtaaatctcgagtggatagcatggaagtattgttcatttaattcaacattaaggtttcaatacatgtaaggttg |
42177272 |
T |
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| Q |
208 |
ctcacaccc |
216 |
Q |
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||||||||| |
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| T |
42177271 |
ctcacaccc |
42177263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 42177515 - 42177478
Alignment:
| Q |
16 |
gtttacaaagtgttgtttctcattggacataatcatag |
53 |
Q |
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||||||||||||||||||||||||| |||| ||||||| |
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| T |
42177515 |
gtttacaaagtgttgtttctcattgaacattatcatag |
42177478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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