View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_15 (Length: 520)
Name: NF1242_low_15
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Original strand, 50558391 - 50558871
Alignment:
| Q |
11 |
catagggcaaaaatttagggagagggttgctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacct |
110 |
Q |
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| T |
50558391 |
catagagcaaaaatttagggagagggttgctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacct |
50558490 |
T |
|
| Q |
111 |
cgtgcagaaccatactcacacccaggagttggacaggcaccttccacaagccgatcacacaagaacctctcgcatgtattgcagtaaagctgaaatttga |
210 |
Q |
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| T |
50558491 |
cgtgcagaaccatactcacactcaggagttggacaggtaccttccacaagccgatcacacaagaacctctcgcaggtatcgcagtaaagctgaaatttga |
50558590 |
T |
|
| Q |
211 |
taagcattttagtaaagcgtaataaagaacctttctgaaattttcaactaaacaagagagaggaacaatgtcaaataaatagaaaattgaacacctgctc |
310 |
Q |
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| T |
50558591 |
taagcattttagtaaagtgtaataaagaacctttctgaaattttcaactaaacaagagagaggaacaatgtcaaataaatagaaaattgaacacctgctc |
50558690 |
T |
|
| Q |
311 |
cattgttctctcggagatccatttgttatcaaatatcttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaaatttatca |
410 |
Q |
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| T |
50558691 |
cattgttctctcggagatccatttgttatcaaatatcttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaaatttatca |
50558790 |
T |
|
| Q |
411 |
aaacttatatcaaaccaatcatagacctccttatgaatagcatggtatctacacaaaaacaccgagaaaagacgattattg |
491 |
Q |
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| T |
50558791 |
aaacttatatcaaaccaatcgtagacctccttatgaatagcatggtatctacacaaaaaaaccgagaaaagacgattattg |
50558871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 461
Target Start/End: Original strand, 29773425 - 29773538
Alignment:
| Q |
348 |
ttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaaatttatcaaaacttatatcaaaccaatcatagacctccttatgaa |
447 |
Q |
| |
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|||| |||||||| ||||| | ||||||||||||||| ||||| || || ||||||| |||||| ||||||| |||||||| ||||| ||||| |||| |
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| T |
29773425 |
tttttgaaaattgcttggcacacttcagtttgctcaggggaagaagtacgtccaaattcatcaaagcttatattgaaccaatcgtagacttccttgtgaa |
29773524 |
T |
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| Q |
448 |
tagcatggtatcta |
461 |
Q |
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| T |
29773525 |
tagcatggtatcta |
29773538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 40 - 208
Target Start/End: Original strand, 29773068 - 29773236
Alignment:
| Q |
40 |
ctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacctcgtgcagaaccatactcacacccaggagt |
139 |
Q |
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| T |
29773068 |
ctaccttgcacttgggaatcttcaattctgtcggatttagaaggttgccacagttctcacactgatcccctctggcagaatcatactcacaccctggaat |
29773167 |
T |
|
| Q |
140 |
tggacaggcaccttccacaagccgatcacacaagaacctctcgcatgtattgcagtaaagctgaaattt |
208 |
Q |
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||| |||| ||| |||||||| ||||| |||||||| | |||||||| |||||||||||||||||| |
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| T |
29773168 |
tgggcaggtaccctccacaagtcgatcggctaagaaccttttgcatgtatcgcagtaaagctgaaattt |
29773236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 383
Target Start/End: Original strand, 50568978 - 50569065
Alignment:
| Q |
298 |
tgaacacctgctccattgttctctcggagatccatttgttatcaaa--tatcttttggaaaattgactggcaaatttcagtttgctca |
383 |
Q |
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| T |
50568978 |
tgaacacctgctccacggttctctcggatagccatttgttatcaaatttatctttttgaaaatttccttgcaaacttcagttagctca |
50569065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 468
Target Start/End: Original strand, 50569071 - 50569104
Alignment:
| Q |
435 |
acctccttatgaatagcatggtatctacacaaaa |
468 |
Q |
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| T |
50569071 |
acctccttattaatagcatggtatctacacaaaa |
50569104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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