View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_152 (Length: 243)
Name: NF1242_low_152
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_152 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5242789 - 5242996
Alignment:
| Q |
1 |
gcaacattatttatttaatttatttgtcacattttgatacatatctatataaaccccttaaccatttgttttaaccacatagcttcgagtacttactgat |
100 |
Q |
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| T |
5242789 |
gcaacattatttatttaatttatttgtcacattttgata----tctatataaaccccttaaccatttattttaaccaca--gcttcgagtacttactgat |
5242882 |
T |
|
| Q |
101 |
caagaaagtgacactacatagcataatcaaccaatccaaatttgagaaaaaacaatggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaa |
200 |
Q |
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| T |
5242883 |
caagaaagtgacactacatagcataatcaaccaatccaaatttgagaaaaaacaatggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaa |
5242982 |
T |
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| Q |
201 |
agcaaggagagact |
214 |
Q |
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|||||||||||||| |
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| T |
5242983 |
agcaaggagagact |
5242996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 2954117 - 2954061
Alignment:
| Q |
155 |
atggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagag |
211 |
Q |
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||||||||| |||||||||| |||||||||||||||| ||||||||| | |||||| |
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| T |
2954117 |
atggcatctcaacaacaaaagtgacaagagcttgaggaaaaggcaaaggagggagag |
2954061 |
T |
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