View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_154 (Length: 238)

Name: NF1242_low_154
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_154
NF1242_low_154
[»] chr5 (8 HSPs)
chr5 (54-228)||(23223846-23224020)
chr5 (132-195)||(23223879-23223942)
chr5 (161-216)||(18728941-18728996)
chr5 (109-167)||(7963269-7963327)
chr5 (162-220)||(12124613-12124671)
chr5 (172-217)||(12124815-12124860)
chr5 (183-219)||(34397228-34397264)
chr5 (113-165)||(42479933-42479985)
[»] chr4 (5 HSPs)
chr4 (162-218)||(2604125-2604181)
chr4 (161-219)||(5244633-5244691)
chr4 (165-220)||(11444836-11444891)
chr4 (165-220)||(11548234-11548289)
chr4 (107-149)||(37709953-37709995)
[»] chr8 (8 HSPs)
chr8 (169-221)||(38201919-38201971)
chr8 (170-217)||(33435345-33435392)
chr8 (109-155)||(45386504-45386550)
chr8 (162-218)||(38202106-38202163)
chr8 (178-219)||(41395716-41395757)
chr8 (110-150)||(34310458-34310498)
chr8 (173-217)||(36110559-36110603)
chr8 (184-220)||(36203462-36203498)
[»] chr2 (6 HSPs)
chr2 (165-217)||(26632415-26632467)
chr2 (109-167)||(14442018-14442076)
chr2 (109-143)||(23466002-23466036)
chr2 (112-149)||(4091499-4091536)
chr2 (118-155)||(19895046-19895083)
chr2 (109-149)||(30481817-30481857)
[»] chr7 (4 HSPs)
chr7 (161-217)||(33342926-33342982)
chr7 (109-143)||(101419-101453)
chr7 (112-144)||(30279060-30279092)
chr7 (109-149)||(35851907-35851947)
[»] scaffold0110 (1 HSPs)
scaffold0110 (109-149)||(31308-31348)
[»] chr6 (2 HSPs)
chr6 (161-220)||(9993017-9993076)
chr6 (109-146)||(17145947-17145984)
[»] chr3 (3 HSPs)
chr3 (109-144)||(6588237-6588272)
chr3 (175-218)||(25258189-25258232)
chr3 (166-218)||(25257981-25258033)
[»] chr1 (6 HSPs)
chr1 (109-144)||(31847318-31847353)
chr1 (162-219)||(5759965-5760022)
chr1 (173-210)||(17919114-17919151)
chr1 (154-195)||(27678478-27678519)
chr1 (178-210)||(9450328-9450360)
chr1 (109-149)||(15691904-15691944)
[»] scaffold0471 (1 HSPs)
scaffold0471 (173-217)||(427-471)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 23224020 - 23223846
Alignment:
Q  54 aaagtccctatactgctatgactaaattgtttagtattgctagaatttggtttacgaaaattgctcttctccctttcaaaattgttcattctcttatatc 153  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23224020 aaagtccctatactgctataactaaattgtttagtattgctagaatttggtttacgaaaattgctcttgtccctttcaaaattgttcattctcttatatc 23223921  T
Q  154 agcggcggttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttcttggtttaca 228  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23223920 agcgacggttaactgtcgctgatataagggaatgagcaatttcataagtgagaagagtatttttcttggtttaca 23223846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 23223879 - 23223942
Alignment:
Q  132 aaattgttcattctcttatatcagcggcggttaactgtcgctgatataagggaatgaacaattt 195  Q
    |||||| |||||| |||||||||||| | |||||| |||||||||||||| |||||||||||||    
T  23223879 aaattgctcattcccttatatcagcgacagttaaccgtcgctgatataagagaatgaacaattt 23223942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 18728941 - 18728996
Alignment:
Q  161 gttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttt 216  Q
    |||||||| |||||||||||| |||||| ||||||||||| |||| ||||||||||    
T  18728941 gttaactgccgctgatataagagaatgatcaatttcataaatgagtagagtatttt 18728996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 7963327 - 7963269
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattctcttatatcagcggcggttaact 167  Q
    ||||||||||||| | ||||||||||||| |||||||||||||| |||||  |||||||    
T  7963327 gaaaattgctcttattcctttcaaaattgatcattctcttatataagcggaagttaact 7963269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 12124671 - 12124613
Alignment:
Q  162 ttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttctt 220  Q
    |||||||  ||||||||||||||||||  |||||||||||| ||||||||| |||||||    
T  12124671 ttaactgctgctgatataagggaatgagaaatttcataagttagaagagtaattttctt 12124613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 12124815 - 12124860
Alignment:
Q  172 ctgatataagggaatgaacaatttcataagtgagaagagtattttt 217  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||    
T  12124815 ctgatataaaggaatgaacaatttcacaagtgagaagagtaatttt 12124860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 34397228 - 34397264
Alignment:
Q  183 gaatgaacaatttcataagtgagaagagtatttttct 219  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  34397228 gaatgaacaatttcatatgtgagaagagtaattttct 34397264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 42479933 - 42479985
Alignment:
Q  113 attgctcttctccctttcaaaattgttcattctcttatatcagcggcggttaa 165  Q
    |||| |||||||| ||| |||||||||||||||||||| ||||| | ||||||    
T  42479933 attgttcttctcctttttaaaattgttcattctcttatctcagcagaggttaa 42479985  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 2604125 - 2604181
Alignment:
Q  162 ttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttc 218  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  2604125 ttaactctcgctgatataagggaatgagcaatttcataagtgagaaaagtatttttc 2604181  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 5244633 - 5244691
Alignment:
Q  161 gttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttct 219  Q
    |||||||| | |||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  5244633 gttaactgcctctgatataagggaatgaataatttcacaagtgagaagagtaattttct 5244691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 11444891 - 11444836
Alignment:
Q  165 actgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttctt 220  Q
    |||| |||| ||||||||||||||  |||||||||||||||| ||||| |||||||    
T  11444891 actgccgctaatataagggaatgaggaatttcataagtgagatgagtaattttctt 11444836  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 11548234 - 11548289
Alignment:
Q  165 actgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttctt 220  Q
    |||| |||||||||||||||||||  |||||||||| ||||| ||||| |||||||    
T  11548234 actgccgctgatataagggaatgaggaatttcataactgagatgagtaattttctt 11548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 37709995 - 37709953
Alignment:
Q  107 acgaaaattgctcttctccctttcaaaattgttcattctctta 149  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  37709995 acgaaaattgctcttctccctttgaaaattgctcattccctta 37709953  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 38201971 - 38201919
Alignment:
Q  169 tcgctgatataagggaatgaacaatttcataagtgagaagagtatttttcttg 221  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  38201971 tcgctaatataagggaatgaacaatttcataagtgaaaagagtaattttcttg 38201919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 33435392 - 33435345
Alignment:
Q  170 cgctgatataagggaatgaacaatttcataagtgagaagagtattttt 217  Q
    |||| ||||||| |||| ||||||||||||||||||||||||| ||||    
T  33435392 cgctaatataagagaataaacaatttcataagtgagaagagtaatttt 33435345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 45386550 - 45386504
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattctcttatatcag 155  Q
    |||||||| | |||||||||||||||||| |||||||||||| ||||    
T  45386550 gaaaattgattttctccctttcaaaattgctcattctcttatctcag 45386504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 38202106 - 38202163
Alignment:
Q  162 ttaactgtcgctgatataagggaatgaacaa-tttcataagtgagaagagtatttttc 218  Q
    ||||||||||||| || | |||||||||||| ||||||| |||||||||||| |||||    
T  38202106 ttaactgtcgctgctaaaggggaatgaacaattttcatacgtgagaagagtaattttc 38202163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 41395716 - 41395757
Alignment:
Q  178 taagggaatgaacaatttcataagtgagaagagtatttttct 219  Q
    |||||||||||| |||||||||||||||||||| | ||||||    
T  41395716 taagggaatgaagaatttcataagtgagaagagcaattttct 41395757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 34310498 - 34310458
Alignment:
Q  110 aaaattgctcttctccctttcaaaattgttcattctcttat 150  Q
    |||| |||||||||||||||||||||| ||||||| |||||    
T  34310498 aaaagtgctcttctccctttcaaaattattcattcccttat 34310458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 36110603 - 36110559
Alignment:
Q  173 tgatataagggaatgaacaatttcataagtgagaagagtattttt 217  Q
    |||||||||||||||| ||||||||||  ||||||||||| ||||    
T  36110603 tgatataagggaatgagcaatttcatagatgagaagagtaatttt 36110559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 36203462 - 36203498
Alignment:
Q  184 aatgaacaatttcataagtgagaagagtatttttctt 220  Q
    |||||||||||||||||||||||||| || |||||||    
T  36203462 aatgaacaatttcataagtgagaagaataattttctt 36203498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 26632415 - 26632467
Alignment:
Q  165 actgtcgctgatataagggaatgaacaatttcataagtgagaagagtattttt 217  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||| ||||    
T  26632415 actgccgctgatacaagggaatgaacaatttcataagtgagaagagtaatttt 26632467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 14442018 - 14442076
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattctcttatatcagcggcggttaact 167  Q
    ||||||||||||||||||||||||||||  |||||||||||  |||||||  |||||||    
T  14442018 gaaaattgctcttctccctttcaaaattactcattctcttaactcagcggaagttaact 14442076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 23466036 - 23466002
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcatt 143  Q
    ||||||||||||||||| |||||||||||||||||    
T  23466036 gaaaattgctcttctccttttcaaaattgttcatt 23466002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 4091536 - 4091499
Alignment:
Q  112 aattgctcttctccctttcaaaattgttcattctctta 149  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  4091536 aattgctcttctcccttttaaaattgttcattccctta 4091499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 19895083 - 19895046
Alignment:
Q  118 tcttctccctttcaaaattgttcattctcttatatcag 155  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  19895083 tcttctccctttcaaaattgttcattcccttatttcag 19895046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 30481857 - 30481817
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattctctta 149  Q
    ||||||||||||||||||| |||||||| ||||||| ||||    
T  30481857 gaaaattgctcttctccctctcaaaattattcattccctta 30481817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 33342926 - 33342982
Alignment:
Q  161 gttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtattttt 217  Q
    ||||| ||||||||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  33342926 gttaattgtcgctgatataagagaatgagcaattccataagtgagaagagtaatttt 33342982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 101453 - 101419
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcatt 143  Q
    |||||||||||||||||||||||||||||||||||    
T  101453 gaaaattgctcttctccctttcaaaattgttcatt 101419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 30279060 - 30279092
Alignment:
Q  112 aattgctcttctccctttcaaaattgttcattc 144  Q
    |||||||||||||||||||||||||| ||||||    
T  30279060 aattgctcttctccctttcaaaattgctcattc 30279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 35851907 - 35851947
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattctctta 149  Q
    |||||||||||||||| |||||||||||| |||||| ||||    
T  35851907 gaaaattgctcttctctctttcaaaattgctcattccctta 35851947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 31308 - 31348
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattctctta 149  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  31308 gaaaattgctcttcttcctttcaaaattgctcattctctta 31348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 9993076 - 9993017
Alignment:
Q  161 gttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttctt 220  Q
    |||||||| || || ||||||||||||| | ||| ||||||||||||||||| |||||||    
T  9993076 gttaactgccgttggtataagggaatgagccattccataagtgagaagagtaattttctt 9993017  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 17145947 - 17145984
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattctc 146  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  17145947 gaaaattgctcttctccatttcaaaattgctcattctc 17145984  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 6588237 - 6588272
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattc 144  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6588237 gaaaattcctcttctccctttcaaaattgttcattc 6588272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 25258189 - 25258232
Alignment:
Q  175 atataagggaatgaacaatttcataagtgagaagagtatttttc 218  Q
    |||||||  ||||||||||||||||||||||||||||| |||||    
T  25258189 atataagaaaatgaacaatttcataagtgagaagagtaattttc 25258232  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 25258033 - 25257981
Alignment:
Q  166 ctgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttc 218  Q
    ||||||||||||||||  |||||||||||| |||| | ||||||||| |||||    
T  25258033 ctgtcgctgatataagaaaatgaacaatttaataaataagaagagtaattttc 25257981  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 31847318 - 31847353
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattc 144  Q
    ||||||||||||||||||||||||||||| ||||||    
T  31847318 gaaaattgctcttctccctttcaaaattgctcattc 31847353  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 5760022 - 5759965
Alignment:
Q  162 ttaactgtcgctgatataagggaatgaacaatttcataagtgagaagagtatttttct 219  Q
    ||||||| || |||||||||  |||||  |||||||||||||||||||||| ||||||    
T  5760022 ttaactgccgttgatataagataatgagtaatttcataagtgagaagagtaattttct 5759965  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 17919151 - 17919114
Alignment:
Q  173 tgatataagggaatgaacaatttcataagtgagaagag 210  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  17919151 tgatataagggaataaacaatctcataagtgagaagag 17919114  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 27678519 - 27678478
Alignment:
Q  154 agcggcggttaactgtcgctgatataagggaatgaacaattt 195  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  27678519 agcggcagttaactgtcgttgatataagggaatgatcaattt 27678478  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 9450328 - 9450360
Alignment:
Q  178 taagggaatgaacaatttcataagtgagaagag 210  Q
    ||||||||||| |||||||||||||||||||||    
T  9450328 taagggaatgagcaatttcataagtgagaagag 9450360  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 15691904 - 15691944
Alignment:
Q  109 gaaaattgctcttctccctttcaaaattgttcattctctta 149  Q
    ||||||| |||||||||| |||||||||| |||||||||||    
T  15691904 gaaaattactcttctccccttcaaaattgatcattctctta 15691944  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 471 - 427
Alignment:
Q  173 tgatataagggaatgaacaatttcataagtgagaagagtattttt 217  Q
    |||||||||||||||| ||||||||||  ||||||||||| ||||    
T  471 tgatataagggaatgagcaatttcatagatgagaagagtaatttt 427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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