View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_17 (Length: 513)
Name: NF1242_low_17
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 71 - 484
Target Start/End: Original strand, 25266316 - 25266718
Alignment:
| Q |
71 |
aacaaccttatgtttagtctattcataaaaggaactaaacgaaaaagatttaaaaataacgtgacaaactaattatgtgac-cacatttaagaaactttc |
169 |
Q |
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| T |
25266316 |
aacaaccttatgtttagtctattcataaaaggaaccaaacgaaaaagatttaaaaataacgtgacaaactaattatgtgacacatttttaagaaactttc |
25266415 |
T |
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| Q |
170 |
caaaacattattttcaaaattagcattgaaccaaagtgctaaatttagcaaataaataactaacttgatcataattt-aggatatcacttccatcatgaa |
268 |
Q |
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| T |
25266416 |
caaaacattattttcaaaattagcattgaac------------tttagcaaataaataactaacttgatcataattttaggatatcacttccatcatgag |
25266503 |
T |
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| Q |
269 |
aaatataatccatttacaaagttcaccttgttaggaaggataaccttataccctacaaattctttaatttccaccaatcactttcttttatgaagtggat |
368 |
Q |
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| T |
25266504 |
aaatataatccatctacaaagttcac-ttgttaggaaggataaccttataccctacaaattctttaatttccaccaaacactttcttttatgaagtggat |
25266602 |
T |
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| Q |
369 |
tctacgaattgtcactaactttatgagaagttcaaaaggcaagatcttaaatttcattctgatttggaagagccactaatttcagaatctgtttggtagt |
468 |
Q |
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| T |
25266603 |
tctacgaattcttaccaactttatgagaagttcaaaagggaagatcttaaatttcattctgatttggaagagccactaatttcagaatctgtttggtagt |
25266702 |
T |
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| Q |
469 |
acacaatatcaccagt |
484 |
Q |
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| T |
25266703 |
acactatatcaccagt |
25266718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 25266060 - 25266131
Alignment:
| Q |
6 |
ctccaataatattttgaaacacttgtg--aagtgtacatacggaaataaaattgcaataatattttaaacaa |
75 |
Q |
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|||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
25266060 |
ctccaatattattttgaaacacttgtgtgaagtgtacatatgtaaataaaattgcaataatattttaaacaa |
25266131 |
T |
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