View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_170 (Length: 208)
Name: NF1242_low_170
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_170 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 18941135 - 18940929
Alignment:
| Q |
1 |
ttgtctcatcttccacgtcgtcagctgtggcgatcatgttacaatcattgccgccgtaacaccttcaacgaatatgttatttttcttctcagattactcc |
100 |
Q |
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| T |
18941135 |
ttgtctcatcttccacgtcgtcagctgtggcgatcc-gttacaatcattgtcgccgtaataccttcaacgaatatgttatttttcttctcagattactcc |
18941037 |
T |
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| Q |
101 |
taatcaaaggtcgctaaaatctattcagttttgatcgacggaaaaggttcctttttatcgccgctgaagaagatcaggaatctgcaaagaggtattattc |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18941036 |
taatcaaaggtcgctaaaatctatttagttttgatcgacggaaaaggtttctttttatcgccgctgaagaagatcaggaatctgcaaagaggtattattc |
18940937 |
T |
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| Q |
201 |
ttacaatc |
208 |
Q |
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|||||||| |
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| T |
18940936 |
ttacaatc |
18940929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 44712359 - 44712238
Alignment:
| Q |
3 |
gtctcatcttccacgtcgtcagctgtggcgatcatgttacaatcattgccgccgtaacaccttcaacgaatatgttatttttcttctcagattactccta |
102 |
Q |
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||||||||||||||| ||||||||| | |||||| |||||||||| || | |||| ||||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
44712359 |
gtctcatcttccacgccgtcagctgcgacgatcacgttacaatcaccgctgtcgtagcaccttcaacgaagatgtttttttt-ttctcagattactccta |
44712261 |
T |
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| Q |
103 |
atcaaaggtcgctaaaatctatt |
125 |
Q |
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| T |
44712260 |
atcaaaggtcgctgaaatctatt |
44712238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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