View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_175 (Length: 205)
Name: NF1242_low_175
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_175 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 4175300 - 4175382
Alignment:
| Q |
26 |
aatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcctctccactgcacgcaactcttggctg |
108 |
Q |
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| T |
4175300 |
aatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcctctccactgcacgcaactcttggctg |
4175382 |
T |
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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 4171340 - 4171392
Alignment:
| Q |
56 |
cagccaaggtttccaaaagtaccctcctctccactgcacgcaactcttggctg |
108 |
Q |
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| T |
4171340 |
cagccaaagtttccaaaagtactctcctctccactgcacgcacctcttggctg |
4171392 |
T |
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