View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_19 (Length: 497)
Name: NF1242_low_19
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 104 - 379
Target Start/End: Original strand, 39793512 - 39793787
Alignment:
| Q |
104 |
agatacctcctttatagtggtaattttcgcaatattttgtttgtaatcttaatgatgctttggnnnnnnngtaaagcacgtagcatttttggtgctgcgg |
203 |
Q |
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| T |
39793512 |
agatacctcctttatagtggtaattttctcaatattttgtttgtaatcttaacgatgctttggtttttttgtaaagcacgtagcatttttggtgctgcgg |
39793611 |
T |
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| Q |
204 |
ccatccaagattgagtgtgatcttgtatttttgagcatgctgtcataggatttaagtttgtttgcagtttaaactttttactatatggaaatatataact |
303 |
Q |
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| T |
39793612 |
ccatccaagattgagtgtgatcttgtatttttgagcatgctgtcataggatttaagtttgtttgcagttgaaactttttactatatggaaatatataact |
39793711 |
T |
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| Q |
304 |
ccatgatcaaagtttactctttggctatatatttatatttgcttcttttaaatattggtaatgcatatactgcttg |
379 |
Q |
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| T |
39793712 |
ccatgatcaaagtttactctttggctatttatttatatttgcttcttttaaatattggtaatgcatatactgcttg |
39793787 |
T |
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Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 388 - 487
Target Start/End: Complemental strand, 44667596 - 44667497
Alignment:
| Q |
388 |
tgagcttctagatttttctgatgtgattgatgagaatgaagaggatgaaagatttgaggggtgggtcggtatgtgtaatgtaatgaaatgttcggtttgg |
487 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44667596 |
tgaggttctagatttttctgatgtgattgatgagaatgaagaggatgaaagatttgaggggtgggtcggtatgtgtaatgtaatgaaatgttcggtttgg |
44667497 |
T |
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