View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_20 (Length: 481)
Name: NF1242_low_20
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 74 - 388
Target Start/End: Complemental strand, 6807205 - 6806870
Alignment:
| Q |
74 |
agataatactactgcttactcaatggaagacaatgcactttggagtaggcgtttggttacttatgttgggcaggttgcggttgcaattttaatctttctc |
173 |
Q |
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| T |
6807205 |
agatactattactgcttactcaatggaagacaatgcactttggagtaggcgtttggttacttatgttggacaggttgcggttgcaattttaatctttctc |
6807106 |
T |
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| Q |
174 |
agatcatggacaaatattggtcttaacatt---------------------gctagttttatcaaaatttgtgagagaattttggttttgtggcgtgcaa |
252 |
Q |
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| T |
6807105 |
cgatcatggacaaatactggtcttaacattctggcaataccaatattcattgctagttttatcaaaatttgtgagagaattttggttttgtggcgtgcaa |
6807006 |
T |
|
| Q |
253 |
gtagccaacacttcaaggagtctttgtttcctgatcctgatccaggtcctaattatgcaagatacatggaaggatacaattcagcttctcatgaagggta |
352 |
Q |
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| T |
6807005 |
gtagccaacacttcaaggagtctttgtttcctgatcctgatccaggtcctaattatgcaagatacatggaaggatacaattcagcttctcatgaagggta |
6806906 |
T |
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| Q |
353 |
tggagttgatgtagaatgcctaattcaatctccatc |
388 |
Q |
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| T |
6806905 |
tggagttgatgtagaatgcctaattcaatctccatc |
6806870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 83 - 385
Target Start/End: Complemental strand, 7329381 - 7329058
Alignment:
| Q |
83 |
tactgcttactcaatggaagacaatgcactttggagtaggcgtttggttacttatgttgggcaggttgcggttgcaattttaatctttctcagatcatgg |
182 |
Q |
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| T |
7329381 |
tactgcttactctatggaagacaatgcactttggagtaggcgtttggttacttatatcggacaagttgtggttgcatttttaacctttcttagatcatgg |
7329282 |
T |
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| Q |
183 |
acaaatattggtcttaacat---------------------tgctagttttatcaaaatttgtgagagaattttggttttgtggcgtgcaagtagccaac |
261 |
Q |
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| T |
7329281 |
acaaatgctgatcttaacattttggcagtaccgatattcattgccggttttatcaaaatcggagaaaggatttgggttttgtggtgtgcaagtagccaac |
7329182 |
T |
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| Q |
262 |
acttcaaggagtctttgtttcctgatcctgatccaggtcctaattatgcaagatacatggaaggatacaattcagcttctcatgaagggtatggagttga |
361 |
Q |
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| T |
7329181 |
aattcaaagagtctttgtttcctgatcccgattcagggcctaattatgcaagatatatggaagcatacaattcagcttcttatgaagggtatgatgttga |
7329082 |
T |
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| Q |
362 |
tgtagaatgcctaattcaatctcc |
385 |
Q |
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|||| || |||| |||||| |||| |
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| T |
7329081 |
tgtacaaggcctgattcaaactcc |
7329058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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