View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_23 (Length: 461)
Name: NF1242_low_23
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 30 - 454
Target Start/End: Complemental strand, 41263668 - 41263244
Alignment:
| Q |
30 |
acttcattgctagaactgatggaaagtaacctggcttagcaaccacaaatttatcagctgcaaattttattttttgggactacagtctacagctgcttat |
129 |
Q |
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| T |
41263668 |
acttcattgctagaactgatggaaagtaacctggcttagcaaccacaaatttatcagctgcaaattttattttttgggactacagtctacagctgcttat |
41263569 |
T |
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| Q |
130 |
aagctctatagtacggaagttctgattaaaagtgtatgcggtgtctaacaaagacatgacgacgatacatgtgaccacattcaattaactcattttcttt |
229 |
Q |
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| T |
41263568 |
aagctctatagtacggaagttctgattaaaagtgtatgcggtgtctaacaaagacatgacgacgatacatgtgaccacattcaattaactcattttcttt |
41263469 |
T |
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| Q |
230 |
acgtattggtgttagtgtcgtatcaggtgtctgtgtgagtgtgccaagtaaccaaacttgcttcaattttctaatagggaacttctacacacaagaaagc |
329 |
Q |
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| T |
41263468 |
acgtattggtgttagtgtcgtatcaagtgtctgtgtgagtgtgccaagtaaccaaacttgcttcaattttctaatagggaacttctacacacaagaaagc |
41263369 |
T |
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| Q |
330 |
gacaaaatgagacatgtgaaagaataaatgctgttttgggagactcgtgtatcaaatgtgaacttcaattggcaggaccagaatatgaacataatcaagg |
429 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41263368 |
gacaaaatgagacatgtgaaagattaaatgctgttttgggagactcgtgtatcaaatgtgaacttcaattggcaggaccagaatatgaacataatcaagg |
41263269 |
T |
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| Q |
430 |
tatctcttctctgtcgcctatgcta |
454 |
Q |
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| T |
41263268 |
tatctcttctctgtcgcctgtgcta |
41263244 |
T |
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