View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_24 (Length: 452)
Name: NF1242_low_24
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_24 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 1762025 - 1762440
Alignment:
| Q |
7 |
tccaagaatataatgctaagatcatgggagacgaaattggaaaaagatggagtttcagagattaaagttgaccaagacttgagaaacttatcaggtgaca |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762025 |
tccacgaatataatgctaagatcatgggagacgaaattggaaaaagatggagtttcagagattaaagttgaccaagacttgagaaacttatcaggtgaca |
1762124 |
T |
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| Q |
107 |
taattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttcaaagcttagagaacttcaaaacatcatttgcaaaatttttgctgg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762125 |
taattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttcaaagcttagagaacttcaaaacatcatttgcaaaatttttgctgg |
1762224 |
T |
|
| Q |
207 |
aattccaggctttaggtatgtttaatctttatcatattatgatacgaggttaatttatttcatatataatattatgttctctactattattgttagtgat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762225 |
aattccaggctttaggtatgtttaatctttatcatattatgatacgaggttaatttatttcatatataatattatgttctctactattattgttagtgat |
1762324 |
T |
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| Q |
307 |
gatactaatgttgaaaatggaatcataatttggttttagatatttgccaaacaaaagcaatagacaaatgtggagattagagaaagagataagctcaaag |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1762325 |
gatactaatgttgaaaatggaatcataatttggttttagatatttgccaaacaaaagcaatagacaaatgtggagattagagaaagagataagttcaaag |
1762424 |
T |
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| Q |
407 |
atatcaaagctgataa |
422 |
Q |
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| T |
1762425 |
atatcaaagctgataa |
1762440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 25196602 - 25196765
Alignment:
| Q |
13 |
aatataatgctaagatcatgggagacgaaattggaaaaagatggagt---ttcagagattaaagttgaccaagacttgagaaacttatcaggtgacataa |
109 |
Q |
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| T |
25196602 |
aatataatggtaagatcttgggagactaaaatagaaggagatggggtgatttcagagattacagttgatgaagatttgcgaagcttgtcggctgacataa |
25196701 |
T |
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| Q |
110 |
ttgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttcaaagcttagaga |
173 |
Q |
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| T |
25196702 |
ttgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagaga |
25196765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 25196942 - 25197050
Alignment:
| Q |
296 |
ttgttagtgatgatactaatgttgaaaatggaatcataatttggttttagatatttgccaaacaaaagcaatagacaaatgtggagattagagaaagaga |
395 |
Q |
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|||||||| ||| ||||||||| | |||||| |||||||| | ||| || || ||||||||||| || |||| |||||| |||||| | |||||||||| |
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| T |
25196942 |
ttgttagtaatggtactaatgtgggaaatggtatcataatcttattt-aggtacttgccaaacaagagaaatatacaaatatggagactggagaaagaga |
25197040 |
T |
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| Q |
396 |
taagctcaaa |
405 |
Q |
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||| |||||| |
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| T |
25197041 |
taaactcaaa |
25197050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 19207340 - 19207460
Alignment:
| Q |
296 |
ttgttagtgatgatactaatgttgaaaatggaatcataatttggttttagatatttgccaaacaaaagcaatagacaaatgtggagattagagaaagaga |
395 |
Q |
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|||||| ||||||||||||||| |||||||| | ||| || || ||||||||| || |||||||||||||||||||| || ||||||||||||||||||| |
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| T |
19207340 |
ttgttaatgatgatactaatgtggaaaatggtaccatgatatg-ttttagatacttaccaaacaaaagcaatagacagatatggagattagagaaagaga |
19207438 |
T |
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| Q |
396 |
taagctcaaagatatcaaagct |
417 |
Q |
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| T |
19207439 |
taaactcaaatatatccaagct |
19207460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 226
Target Start/End: Original strand, 19207088 - 19207257
Alignment:
| Q |
57 |
agtttcagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaatt |
156 |
Q |
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||||||||||||||||||||| |||| || ||| ||| |||| |||||||||||| |||| | ||||||||||||||||||| ||||||| |||||| |
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| T |
19207088 |
agtttcagagattaaagttgatgaagatctgcgaagcttgtcagctgacataattgctagagttagttttgggagcaattatgtcgaaggaaaagaaata |
19207187 |
T |
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| Q |
157 |
ttttcaaagcttagagaacttcaaaacatcatttgcaaaatttttgctggaattccaggctttaggtatg |
226 |
Q |
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| T |
19207188 |
ttcacaaagcttagagatcttataaaactcctctccaagatatatgttggaattccgggctttaggtatg |
19207257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 9688 - 9766
Alignment:
| Q |
339 |
gttttagatatttgccaaacaaaagcaatagacaaatgtggagattagagaaagagataagctcaaagatatcaaagct |
417 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||| | |||||| ||||||||||| |
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| T |
9688 |
gttttagatacttgccaaacaaaagcaatagacagatatggagattggaggaagagattaactcaaatatatcaaagct |
9766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 9414 - 9527
Alignment:
| Q |
57 |
agtttcagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaatt |
156 |
Q |
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|||||||||||| ||| ||||| |||| || ||| ||| |||| |||||||||||| |||| ||||||||||||||||||||| |||||| |||||| |
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| T |
9414 |
agtttcagagataaaaattgacgaagatctgcgaagcttgtcagctgacataattgctagagtttgttttgggagcaattatgtcaaaggaaaagaaata |
9513 |
T |
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| Q |
157 |
ttttcaaagcttag |
170 |
Q |
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| T |
9514 |
ttcacaaagcttag |
9527 |
T |
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