View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_25 (Length: 450)
Name: NF1242_low_25
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 41620748 - 41621078
Alignment:
| Q |
11 |
cagagatcttagatgaggtacttctttgtcagcaaggaaggacactaactcaacaccaacaagcatcaaagactgttgattcaggagaaaaggcaaaggc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41620748 |
cagagatcttagatgaggtacttctttgtcagcaaggaaggacactaactcaacaccaacaagcatcacagactgttgattcaggagaaaaggcaaaggc |
41620847 |
T |
|
| Q |
111 |
aacacgttcgcgatcgaagaaagtatctactacgaacaatgccacagttgtagatttgtggactatgctaactcaatgtgcacaggccgtggcaagctat |
210 |
Q |
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| T |
41620848 |
agcacgttcgcgatcgaagaaagtatctactacgaacaatgccacagttgtggatttgtggactatgctaactcaatgtgcacaggccgtggcaagctat |
41620947 |
T |
|
| Q |
211 |
gatcaaaggaatacaaatgagctactcaagcagattaggaaacactcttcgccttttggggatggacttcagcggttagctcattactttgctaatggtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41620948 |
gatcaaaggaatacaaatgagctactcaagcagattaggaaacactcttcgccttttggggatggacttcagcggttagctcattactttgctaatggtc |
41621047 |
T |
|
| Q |
311 |
ttgagataagatttgctgccgagattccatc |
341 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
41621048 |
ttgagataagatttgctgccgagattccatc |
41621078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 41627055 - 41627378
Alignment:
| Q |
11 |
cagagatcttagatgaggtacttctttgtcagcaaggaaggacactaactcaacaccaacaagcatcaaagactgttgattcaggagaaaaggcaaaggc |
110 |
Q |
| |
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||||||| |||||||||||||| |||| |||| |||||| ||| || |||||| |||||||||||||| | | |||||||||||||| ||||||||||| |
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| T |
41627055 |
cagagattttagatgaggtactgctttatcagaaaggaaagactctcactcaataccaacaagcatcacataatgttgattcaggaggaaaggcaaagga |
41627154 |
T |
|
| Q |
111 |
aacacgttcgcgatcgaagaaagtatctactacgaacaatgccacagttgtagatttgtggactatgctaactcaatgtgcacaggccgtggcaagctat |
210 |
Q |
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||||| |||||| | |||||||| |||||| || ||||||||| | | ||| ||||||||||| ||||||| |||||||||||| || ||||| ||||| |
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| T |
41627155 |
aacacattcgcgtttgaagaaagcatctacgacaaacaatgccgcggctgtggatttgtggaccatgctaaatcaatgtgcacaagctgtggcgagctac |
41627254 |
T |
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| Q |
211 |
gatcaaaggaatacaaatgagctactcaagcagattaggaaacactcttcgccttttggggatggacttcagcggttagctcattactttgctaatggtc |
310 |
Q |
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||||||||||||||| ||||||||||||| ||||||||| | |||||||||||||| || |||||||| || || ||||||||||||||||||||||||| |
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| T |
41627255 |
gatcaaaggaatacagatgagctactcaaacagattaggcatcactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtc |
41627354 |
T |
|
| Q |
311 |
ttgagataagatttgctgccgaga |
334 |
Q |
| |
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||||||||||||| ||||| |||| |
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| T |
41627355 |
ttgagataagattggctgctgaga |
41627378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 41624094 - 41624417
Alignment:
| Q |
11 |
cagagatcttagatgaggtacttctttgtcagcaaggaaggacactaactcaacaccaacaagcatcaaagactgttgattcaggagaaaaggcaaaggc |
110 |
Q |
| |
|
||||||| |||||||||||||| |||| |||| ||||| ||| || |||||||||||||||||||| | | | ||||||||||| ||||| ||||| |
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| T |
41624094 |
cagagattttagatgaggtactgctttatcagacaggaaagactctcactcaacaccaacaagcatcttataattatgattcaggaggaaaggaaaagga |
41624193 |
T |
|
| Q |
111 |
aacacgttcgcgatcgaagaaagtatctactacgaacaatgccacagttgtagatttgtggactatgctaactcaatgtgcacaggccgtggcaagctat |
210 |
Q |
| |
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||||| ||||| | |||||||| |||||||||||| |||| | | | ||| ||||||||||| ||||| | |||||||||||| || ||||| ||||| |
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| T |
41624194 |
aacacattcgcttttgaagaaagcatctactacgaaaaatgtcgcggctgtggatttgtggaccatgcttaatcaatgtgcacaagctgtggcgagctac |
41624293 |
T |
|
| Q |
211 |
gatcaaaggaatacaaatgagctactcaagcagattaggaaacactcttcgccttttggggatggacttcagcggttagctcattactttgctaatggtc |
310 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| || |||||||| || || ||||||||||||||||||||||||| |
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| T |
41624294 |
gatcaaaggaatacagatgagctactcaaacagattaggcaacactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtc |
41624393 |
T |
|
| Q |
311 |
ttgagataagatttgctgccgaga |
334 |
Q |
| |
|
||||||||||||| |||||||||| |
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| T |
41624394 |
ttgagataagattggctgccgaga |
41624417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 160 - 315
Target Start/End: Original strand, 23930072 - 23930227
Alignment:
| Q |
160 |
gtagatttgtggactatgctaactcaatgtgcacaggccgtggcaagctatgatcaaaggaatacaaatgagctactcaagcagattaggaaacactctt |
259 |
Q |
| |
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|||||||| |||||| || |||||||||||||||| || || | |||||||||||||||||| ||||||| |||| |||||||||||| | || |||| |
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| T |
23930072 |
gtagatttatggactttgttaactcaatgtgcacaagctgttggtagctatgatcaaaggaatgcaaatgatatactgaagcagattaggcagcattctt |
23930171 |
T |
|
| Q |
260 |
cgccttttggggatggacttcagcggttagctcattactttgctaatggtcttgag |
315 |
Q |
| |
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|||| ||| |||||||||||||| |||||||||||||||||| |||| |||||| |
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| T |
23930172 |
cgccaagtggcgatggacttcagcgtttagctcattactttgctgatggacttgag |
23930227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 23912448 - 23912350
Alignment:
| Q |
217 |
aggaatacaaatgagctactcaagcagattaggaaacactcttcgccttttggggatggacttcagcggttagctcattactttgctaatggtcttgag |
315 |
Q |
| |
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|||||| | ||||||||||| |||||||||||| |||| ||||| || | ||||||||||| || |||| |||||||||||||| ||||| |||||| |
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| T |
23912448 |
aggaatgctaatgagctactgaagcagattaggcaacattcttcaccctctggggatggaccacaaaggttggctcattactttgccaatggccttgag |
23912350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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