View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_26 (Length: 447)
Name: NF1242_low_26
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 4409064 - 4408792
Alignment:
| Q |
30 |
tgaattatggggcagctatataattcagttttagatcagaggttggttttcagaagaatagtctaaggaataatgatggatagcattttataatttgaat |
129 |
Q |
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| T |
4409064 |
tgaattatggggcagctatataattcagttttagatcagaggttggttttcagaagaatagtctaagcaataatgatggaaagcattttataatttgaat |
4408965 |
T |
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| Q |
130 |
tatttgtaagttttaaaaaatcacgggagagttttatcaaagaatccatttggattaattggatatgatcatatgtaataaaagtcattaggttaaattt |
229 |
Q |
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| T |
4408964 |
tatttgtaagttttaaaaaatcacgggagagttttatcaaagaatccatttggattaattggatatgatcatatgtaataaaagtcattaggttaaattt |
4408865 |
T |
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| Q |
230 |
tacaaaatttatttttaacatttcgataccatggagatttgttgggtacattcaatcatctaactatgtcatc |
302 |
Q |
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| T |
4408864 |
tacaaaatttatttttaacatttcgataccatggagcttagttgggtacattcaatcatctaactatgtcatc |
4408792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 361 - 433
Target Start/End: Complemental strand, 4408733 - 4408661
Alignment:
| Q |
361 |
ggacaccggtatctaacaaatccaatttgaccaagaactttccttattttttccattctttaaaacgaggagt |
433 |
Q |
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| T |
4408733 |
ggacaccggtatctaacaaatccaatttgaccaagaactttccttattttttccattctttaaaacgaggagt |
4408661 |
T |
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