View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_28 (Length: 430)

Name: NF1242_low_28
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_28
NF1242_low_28
[»] chr7 (5 HSPs)
chr7 (109-430)||(46936899-46937214)
chr7 (170-273)||(36853049-36853151)
chr7 (194-272)||(24547692-24547770)
chr7 (218-272)||(46766091-46766145)
chr7 (212-272)||(35169991-35170049)
[»] chr5 (6 HSPs)
chr5 (164-273)||(35035586-35035695)
chr5 (214-272)||(16230755-16230813)
chr5 (212-261)||(16252635-16252684)
chr5 (213-272)||(8012027-8012086)
chr5 (220-266)||(36639753-36639799)
chr5 (171-207)||(43207914-43207950)
[»] chr8 (4 HSPs)
chr8 (214-272)||(26762885-26762943)
chr8 (212-272)||(30011734-30011794)
chr8 (213-272)||(26815559-26815620)
chr8 (212-248)||(40694463-40694499)
[»] chr3 (6 HSPs)
chr3 (213-263)||(43244854-43244904)
chr3 (221-265)||(42336425-42336469)
chr3 (214-275)||(48553065-48553124)
chr3 (170-209)||(45161775-45161814)
chr3 (212-262)||(7928767-7928817)
chr3 (212-250)||(33262587-33262624)
[»] chr4 (3 HSPs)
chr4 (195-272)||(6468691-6468768)
chr4 (214-252)||(6959316-6959354)
chr4 (217-249)||(41251669-41251701)
[»] chr1 (5 HSPs)
chr1 (168-252)||(16979579-16979663)
chr1 (216-275)||(420501-420560)
chr1 (194-275)||(974465-974546)
chr1 (212-266)||(15954009-15954063)
chr1 (220-272)||(14303963-14304015)
[»] scaffold0312 (1 HSPs)
scaffold0312 (216-275)||(10011-10070)
[»] chr2 (4 HSPs)
chr2 (169-274)||(10231798-10231903)
chr2 (214-264)||(26804046-26804096)
chr2 (171-272)||(5262383-5262484)
chr2 (218-259)||(9529531-9529572)
[»] chr6 (5 HSPs)
chr6 (194-266)||(4593883-4593955)
chr6 (213-273)||(8782990-8783050)
chr6 (212-251)||(6893758-6893797)
chr6 (196-248)||(29872548-29872599)
chr6 (172-240)||(33786196-33786264)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 109 - 430
Target Start/End: Original strand, 46936899 - 46937214
Alignment:
Q  109 caaatatataataatattacaaatttaacaactcttggaaaagttatttatactatactaagagtttaattttgatgcactcttggtgtaaaaagtttta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  46936899 caaatatataataatattacaaatttaacaactcttggaaaagttatttata-----ctaagagtttaattttgatgcactcttggtgtaaaaagtttta 46936993  T
Q  209 tcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgtgatgattataatttattcacagcataaaaagct 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46936994 tcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgtgatgattataatttattgacagcataaaaagct 46937093  T
Q  309 ttacaccaacgatgtattatatataaaatcatattacaaactctaaaggaaaaatcaatgaaatagataaatgtaataagccaagttactaaccgtatct 408  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46937094 ttacaccaacgatgta-tatatataaaatcataatacaaactctaaaggaaaaatcaatgaaatagataaatgcaataagccaagttactaaccgtatct 46937192  T
Q  409 tgaatagtttgcaatgaggttt 430  Q
    ||||||||||||||||||||||    
T  46937193 tgaatagtttgcaatgaggttt 46937214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 36853049 - 36853151
Alignment:
Q  170 gagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatc 269  Q
    ||||||||||||||| |||| | ||| |||||||||| |   |||||  ||||||||| |||||||||||||||||||||||| | ||||||||| ||||    
T  36853049 gagtttaattttgatacactgtcggtataaaaagttt-acattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagttatgattataatc 36853147  T
Q  270 aaat 273  Q
    ||||    
T  36853148 aaat 36853151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 24547692 - 24547770
Alignment:
Q  194 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 272  Q
    |||||||||||||||   |||||| ||||||||| ||||||||| ||||| |||||||| | |||||||| || |||||    
T  24547692 gtgtaaaaagttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtcaaa 24547770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 46766145 - 46766091
Alignment:
Q  218 caaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 272  Q
    ||||||| || ||||||||||||||||||||||||||  |||||||||| |||||    
T  46766145 caaatcataaccaatcatatgtgtgactttagaagcaggtatgattaaagtcaaa 46766091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 35170049 - 35169991
Alignment:
Q  212 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 272  Q
    ||||||||||||| || |||||||  ||||||||||||||| | ||||||||||| |||||    
T  35170049 tgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaa 35169991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 35035695 - 35035586
Alignment:
Q  164 tactaagagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatt 263  Q
    ||||| ||||||||||||||| |||| | ||| |||||| |||||   |||||  ||||||||| ||||||||||||||| |||||||| | ||||||||    
T  35035695 tactatgagtttaattttgatacactgtcggtataaaaaattttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgatt 35035596  T
Q  264 aaaatcaaat 273  Q
    ||||||||||    
T  35035595 aaaatcaaat 35035586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 16230755 - 16230813
Alignment:
Q  214 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 272  Q
    |||||||||||||| ||||||||||| ||| |||||||| | ||||||||||| |||||    
T  16230755 tcaacaaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaa 16230813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 16252684 - 16252635
Alignment:
Q  212 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatga 261  Q
    |||||||| ||||||||||||||| ||||||||||||||||  |||||||    
T  16252684 tgtcaacacatcacaatcaatcatgtgtgtgactttagaagtgattatga 16252635  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 8012086 - 8012027
Alignment:
Q  213 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 272  Q
    |||||||||||||||||||||||||  ||||||||| ||  | ||||||| |||||||||    
T  8012086 gtcaacaaatcacaatcaatcatatacgtgactttaaaaatagttatgataaaaatcaaa 8012027  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 36639753 - 36639799
Alignment:
Q  220 aatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 266  Q
    |||||||  |||||||||||||||||||||||| | |||||||||||    
T  36639753 aatcacatgcaatcatatgtgtgactttagaagtagttatgattaaa 36639799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 43207950 - 43207914
Alignment:
Q  171 agtttaattttgatgcactcttggtgtaaaaagtttt 207  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  43207950 agtttaattttcatgcacttttggtgtaaaaagtttt 43207914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 26762943 - 26762885
Alignment:
Q  214 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 272  Q
    |||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||    
T  26762943 tcaaaaaatcacaatcaatcatttgtatgactttagaagtaattatgattaaagtcaaa 26762885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 30011734 - 30011794
Alignment:
Q  212 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 272  Q
    ||||||||||||| |||||||||||||||||| |||||||| | |||||||| || |||||    
T  30011734 tgtcaacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgattgaagtcaaa 30011794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 26815620 - 26815559
Alignment:
Q  213 gtcaacaaatcacaatcaatcatatgtgt--gactttagaagcaattatgattaaaatcaaa 272  Q
    |||||||||||||||||||||||||||||  ||||||||||  | ||||||| |||||||||    
T  26815620 gtcaacaaatcacaatcaatcatatgtgtgcgactttagaaatagttatgataaaaatcaaa 26815559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 40694463 - 40694499
Alignment:
Q  212 tgtcaacaaatcacaatcaatcatatgtgtgacttta 248  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  40694463 tgtcaacaaaacacaatcaatcatgtgtgtgacttta 40694499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 43244904 - 43244854
Alignment:
Q  213 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatt 263  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  43244904 gtcaacaaatcacaatcaataatatgtgtgactttagaagtgattatgatt 43244854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 42336469 - 42336425
Alignment:
Q  221 atcacaatcaatcatatgtgtgactttagaagcaattatgattaa 265  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  42336469 atcacaatcaatcatatgtgtgactttagaattaattatgattaa 42336425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 48553065 - 48553124
Alignment:
Q  214 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 275  Q
    |||||||||||||||||||||||  ||||||||||||||   ||||||||||| ||||||||    
T  48553065 tcaacaaatcacaatcaatcata--tgtgactttagaagtttttatgattaaattcaaatgt 48553124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 45161814 - 45161775
Alignment:
Q  170 gagtttaattttgatgcactcttggtgtaaaaagttttat 209  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  45161814 gagtttaattttaatgaactcttggtgtaaaaagttttat 45161775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 7928817 - 7928767
Alignment:
Q  212 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgat 262  Q
    |||||||| ||| || ||||||||||||||||||||||||| | |||||||    
T  7928817 tgtcaacagatcccactcaatcatatgtgtgactttagaagtagttatgat 7928767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 33262587 - 33262624
Alignment:
Q  212 tgtcaacaaatcacaatcaatcatatgtgtgactttaga 250  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33262587 tgtcaacaaa-cacaatcaatcatatgtgtgactttaga 33262624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 6468768 - 6468691
Alignment:
Q  195 tgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 272  Q
    ||||||||||||||   |||||||||||||||| ||  ||||||| |||||||||||| ||||| ||||||| |||||    
T  6468768 tgtaaaaagttttacactgtcaacaaatcacaaccacgcatatgtatgactttagaagtaattaagattaaagtcaaa 6468691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 6959354 - 6959316
Alignment:
Q  214 tcaacaaatcacaatcaatcatatgtgtgactttagaag 252  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  6959354 tcaacaaatcacaaccaatcatatgtgtgacttaagaag 6959316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 41251669 - 41251701
Alignment:
Q  217 acaaatcacaatcaatcatatgtgtgactttag 249  Q
    ||||||||||||||||||||||||| |||||||    
T  41251669 acaaatcacaatcaatcatatgtgtaactttag 41251701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 16979579 - 16979663
Alignment:
Q  168 aagagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaag 252  Q
    ||||||||||||||||| |||| |  |||||||||| ||||   |||||||||||||||| |||  |||| ||||||||||||||    
T  16979579 aagagtttaattttgatacactgtcagtgtaaaaagatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaag 16979663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 420501 - 420560
Alignment:
Q  216 aacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 275  Q
    |||||| ||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||    
T  420501 aacaaagcacaatcaatcatatgtgtgatttttgaagtaattatggttaaagtcaaatgt 420560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 974546 - 974465
Alignment:
Q  194 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 275  Q
    |||||||||||||||   | | ||||||  |||||||||||||||||||| ||| |||| | ||||| ||||||||||||||    
T  974546 gtgtaaaaagttttacactctgaacaaagtacaatcaatcatatgtgtgatttttgaagtagttatggttaaaatcaaatgt 974465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 15954009 - 15954063
Alignment:
Q  212 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 266  Q
    |||||| |||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  15954009 tgtcaataaatcagaatcaatcgtatttgtgactttagaagtagttatgattaaa 15954063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 14304015 - 14303963
Alignment:
Q  220 aatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 272  Q
    |||||||| |||||||||| ||||||||| ||| | ||||||||||| |||||    
T  14304015 aatcacaaccaatcatatgagtgactttaaaagtagttatgattaaagtcaaa 14303963  T

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Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 10070 - 10011
Alignment:
Q  216 aacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 275  Q
    |||||| ||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||    
T  10070 aacaaagcacaatcaatcatatgtgtgatttttgaagtaattatggttaaagtcaaatgt 10011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 10231798 - 10231903
Alignment:
Q  169 agagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaat 268  Q
    ||||||||||||||||  | | |  |||||||||||||||   |||| ||| || |||||||||||||||||||| |||||||  | ||||||| ||| |    
T  10231798 agagtttaattttgatatattgtcagtgtaaaaagttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaagt 10231897  T
Q  269 caaatg 274  Q
    ||||||    
T  10231898 caaatg 10231903  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 26804046 - 26804096
Alignment:
Q  214 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatta 264  Q
    |||||||||||||||||||| ||| | |||||||||||| |||||| ||||    
T  26804046 tcaacaaatcacaatcaatcttatctctgactttagaagtaattataatta 26804096  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 5262383 - 5262484
Alignment:
Q  171 agtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatca 270  Q
    |||||||||||||| |||| || ||||||||||||||    ||| || || |||||| || |||||||||||| ||| |||| | ||||||| ||| |||    
T  5262383 agtttaattttgatacactgttagtgtaaaaagtttttcactgttaataagtcacaaacattcatatgtgtgagtttcgaagtagttatgatcaaagtca 5262482  T
Q  271 aa 272  Q
    ||    
T  5262483 aa 5262484  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 9529531 - 9529572
Alignment:
Q  218 caaatcacaatcaatcatatgtgtgactttagaagcaattat 259  Q
    |||||||||| |||||||||||||||||||| ||| ||||||    
T  9529531 caaatcacaaccaatcatatgtgtgactttaaaagtaattat 9529572  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 4593955 - 4593883
Alignment:
Q  194 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 266  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||  | |||||||||| | ||| |||||||    
T  4593955 gtgtaaaaagttttacggtgtcagcaaatcacaaccaatcatatgatttactttagaagtagttaagattaaa 4593883  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 8783050 - 8782990
Alignment:
Q  213 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaat 273  Q
    ||||||||||||||| ||||||||| | ||||||| |||| | ||||||||||| ||||||    
T  8783050 gtcaacaaatcacaaccaatcatatatatgacttttgaagtagttatgattaaagtcaaat 8782990  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 6893758 - 6893797
Alignment:
Q  212 tgtcaacaaatcacaatcaatcatatgtgtgactttagaa 251  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  6893758 tgtcaacaaattacagtcaatcatatgtgtgactttagaa 6893797  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 29872599 - 29872548
Alignment:
Q  196 gtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgacttta 248  Q
    |||||||||||||   |||||| ||||||||| ||||||||||||||||||||    
T  29872599 gtaaaaagttttacactgtcaa-aaatcacaaccaatcatatgtgtgacttta 29872548  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 33786264 - 33786196
Alignment:
Q  172 gtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtg 240  Q
    |||||||||||||  ||  | ||| |||||||||||||  | ||||||||||||||||||| |||||||    
T  33786264 gtttaattttgataaaccgtcggtataaaaagttttatactatcaacaaatcacaatcaattatatgtg 33786196  T

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