View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_3 (Length: 722)
Name: NF1242_low_3
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 498
Target Start/End: Original strand, 53268024 - 53268514
Alignment:
| Q |
10 |
aagaatattgatcaccaggcttcactaagcttcggagttcattgtttaaaccttgtggatatggctttgttggtaagaaaattttcttggtaaaaaacta |
109 |
Q |
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| T |
53268024 |
aagaatattgatcactaggcttcactaagcttcggagttcattgtttaaaccttgtggatatggctttgttggtaagaaaattttcttggtaaaacacta |
53268123 |
T |
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| Q |
110 |
aacgtagataagacttgcannnnnnnng-aatcccacactaaacatagataagacttaaagnnnnnnnnnnnnnnttcctcgggtctcattttaagnnnn |
208 |
Q |
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| T |
53268124 |
aacgtagataagacttgcattttttttttaatcccacactaaacatagataagacttaaagaaaaaaaaaa----ttcctcgggtctcattttaagaaaa |
53268219 |
T |
|
| Q |
209 |
nnnntcannnnnnnaattaattaaacaattttaaaaataccatatacaagttattcaataaatttataaaacgatttgtttatttttataattaaggatc |
308 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53268220 |
aaaatcatttttttaattaattaaataattttaaaaataccatatacaagttattcaataaatttataaaact-tttgtttatttttataattaaggatc |
53268318 |
T |
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| Q |
309 |
agatggagtataatgagttgtctaaatcgttttttggtatttgtagaaaactccaaaaact--nnnnnnnnncacgattgtactttccataaacaaataa |
406 |
Q |
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| T |
53268319 |
agatggagtataatgatttgtctaaatcgttttttggtatttgtagaaaactccaaaaactaaaaaaaaaaacacgattgtactttccataaacaaataa |
53268418 |
T |
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| Q |
407 |
aacaatgtcatgtgaaaattttgagaacatgtagactttgctcaacaccccacgg----ttgttgtacattgtactccaaattaaatacttaaact |
498 |
Q |
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| T |
53268419 |
aacaatgtcatgtgaaaattttgagaacatgtagactttgctcaacaccccatggttgtttgttgtacattgtactccaaattaaatacttaaact |
53268514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 493 - 693
Target Start/End: Original strand, 53269435 - 53269635
Alignment:
| Q |
493 |
taaactacatcttataacgacgaactaaaactttatagttttgattgaaatgtctctccattttcatttatcatagtgaagaatgtgaagtgttaaaatc |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53269435 |
taaactacatcttataacgacgaactaaaactttatagttttgattgaaatgtctctccattttcatttatcacagtgaagaatgtgaagtgttaaaatc |
53269534 |
T |
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| Q |
593 |
acannnnnnnnaatattcaattttttatttagtgaaatcgaagtgaattctaaactttaaaaacgagtctctcatatagtggtgagatccatattgatta |
692 |
Q |
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||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
53269535 |
acattttttttaatattcaattttttatttagcgaaatcgaagtgaattctaaactttaaaaacgaatctctcatatagtggtgagatccatatggatta |
53269634 |
T |
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| Q |
693 |
t |
693 |
Q |
| |
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| |
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| T |
53269635 |
t |
53269635 |
T |
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