View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_32 (Length: 421)

Name: NF1242_low_32
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_32
NF1242_low_32
[»] chr7 (1 HSPs)
chr7 (79-365)||(39263414-39263703)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 79 - 365
Target Start/End: Complemental strand, 39263703 - 39263414
Alignment:
Q  79 agttgtatatcaaatagttatatgtgaggtctcgaaaaatattatactttaccagattttgtttcaaaatctatttcccaaatcaaattattattgcagt 178  Q
    |||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39263703 agttgtatatcaaacagttatatataaggtctcgaaaaatattatgctttaccagattttgtttcaaaatctatttcccaaatcaaattattattgctgt 39263604  T
Q  179 gacttaggcctatcaaatta--ttattgtggcaaaatttgactttcgttgaagttattttattaagatgtata-tattgttagttccttattagtta-gt 274  Q
    |||||||||||||||  | |  | ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||    
T  39263603 gacttaggcctatcatgtaaagtaattgtggcaaaatttgactttagttgaagttattttattaagatgtattgtattgttagttccttattagttaagt 39263504  T
Q  275 tataatcgtacttttctctatcaaaggtatttgatgtacaaatatcgaactaagtgttaatatatgtggaaatcaatggatattggagtag 365  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||    
T  39263503 tataaccgtacttttctctatcaaaggtatttgatgtacaaatttcgaactaaatgttaatatatgtggaaatcaat-gatattggagtag 39263414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University