View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_33 (Length: 413)
Name: NF1242_low_33
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_33 |
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| [»] scaffold0504 (2 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 8262 - 8457
Alignment:
| Q |
1 |
gaactctagttaatattaaccaccttatgattatgatctaaatttatatatgctcttgtagaggatttccaaaattttctgcaggtaaaatctttgttcc |
100 |
Q |
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| T |
8262 |
gaactttaggtaatattaaccaccttatgattatgatctaaatttatatattatcgtgtagagtatttccaaaagtttctgcaggtaaaatctttgttcc |
8361 |
T |
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| Q |
101 |
atgtactaccaaatacacagaacggataattgtggatttgttgtgttggaaagcatacaatgtgatagcaatgcatagtgtcataccccacatagc |
196 |
Q |
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| T |
8362 |
atgtgctaccaaatacacagaacggataattgtggatttgttgtgttggaaagcatacaatgtgatagcaatgcatagtgtcataccccacatagc |
8457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 224 - 360
Target Start/End: Original strand, 8488 - 8624
Alignment:
| Q |
224 |
agatgcttctttgatgcttcaactgaaaatgaagtttgtgtcatgttctgtaagtgaaaaaacttcattatatatattttataggatccaatccaacaca |
323 |
Q |
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| T |
8488 |
agatgcttctttgatgcttcaactgaaaatgaagtttgtgtcatattctgtaagtgaaaaaactttattatctatattttataggatccaatccaacaca |
8587 |
T |
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| Q |
324 |
tgttgaccaagtgattgaattgaattggtcagtataa |
360 |
Q |
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| T |
8588 |
tgctgaccaagtgattgaattgaattggtcagtataa |
8624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 12026249 - 12026093
Alignment:
| Q |
1 |
gaactctagttaatattaaccaccttatgattatgatctaaatttatatatgctcttgtagaggatttccaaaattttctgcaggtaaaatctttgttcc |
100 |
Q |
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| T |
12026249 |
gaactttagttaatattaaccaccttttgattatgatctaaatttatatatgctcttgtagaggatttccaaaattttctgcaggtaaaatctttgttcc |
12026150 |
T |
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| Q |
101 |
atgtactaccaaatacacagaacggataattgtggatttgttgtgttggaaagcata |
157 |
Q |
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| T |
12026149 |
atgtactaccaaatacatagaatggataatggtggatttgttgaattggaaagcata |
12026093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 12026029 - 12025915
Alignment:
| Q |
224 |
agatgcttctttgatgcttcaactgaaaatgaagtttgtgtcatgttctgtaagtgaaaaaacttcattatatatattttataggatccaatccaacaca |
323 |
Q |
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| T |
12026029 |
agatgcttcttagatgcttgaactgaaaatgaagtttgtgtcatattctgtaagtgaaaaaacttcatta-------tctataggatccaatccaacaca |
12025937 |
T |
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| Q |
324 |
tgttgaccaagtgattgaattg |
345 |
Q |
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| T |
12025936 |
tggtgcccaagtgattgaattg |
12025915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 18189769 - 18189817
Alignment:
| Q |
13 |
atattaaccaccttatgattatgatctaaatttatatatgctcttgtag |
61 |
Q |
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| T |
18189769 |
atattaaccaccttgtgattatgatctaaatttatatatgctcatgtag |
18189817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 18189947 - 18190003
Alignment:
| Q |
236 |
gatgcttcaactgaaaatgaagtttgtgtcatgttctgtaagtgaaaaaacttcatt |
292 |
Q |
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| T |
18189947 |
gatgcttcaactgaaaatgaagtttgtgttgtattctgtaagtaaaaaaacttcatt |
18190003 |
T |
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