View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_35 (Length: 396)
Name: NF1242_low_35
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 29 - 384
Target Start/End: Complemental strand, 7948684 - 7948329
Alignment:
| Q |
29 |
aaaaaccataagagagaaatcaaatttattttattttctgcaagttggatacaaaacttgaaccagcaaaaccagcagaaccaccaacaacacagatcaa |
128 |
Q |
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| T |
7948684 |
aaaaaccataagagagaaatcaaatttattttattttctgcaagttggatacaaaacttgaaccagcaaaaccagcagaaccaccaacaacacagatcaa |
7948585 |
T |
|
| Q |
129 |
agcaaccacagcctgcaatccaacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaacaaagctgagtgtgaag |
228 |
Q |
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| T |
7948584 |
agcaaccacagcctgcaatccaacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaacaaagctgagtgtgaag |
7948485 |
T |
|
| Q |
229 |
agtgatcctggagttgatggatcagtagcagctgataagacaccaagttcttctgcttttgaaaggagaccaagtttctctattgttgagagagataatc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7948484 |
agtgatcctggagttgatggatcagtagcagctgataaaacaccaagttcttctgcttttgaaaggagaccaagtttctctattgttgagagagataatc |
7948385 |
T |
|
| Q |
329 |
ctgctttctcggctgccgataataaacctgctttctctgccttggttaacagtctc |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7948384 |
ctgctttctcggctgccgataataaacctgctttctctgccttggttaacagtctc |
7948329 |
T |
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