View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_37 (Length: 394)
Name: NF1242_low_37
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 89 - 342
Target Start/End: Original strand, 2736860 - 2737107
Alignment:
| Q |
89 |
catgctacacatataagttacactaattttnnnnnnnntacactagttagagaatataatcaaaccccacggtttgtcactcaaaacatgaaaagacacg |
188 |
Q |
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| T |
2736860 |
catgctacacatataagttacactaattttaaaaaaa-tacactagttagagaatataatcaaaccccacggtttgtcactcaaaacgtgaaaagacacg |
2736958 |
T |
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| Q |
189 |
gatatggcttagtgggattagatggataacatgttaggnnnnnnnnntatatatgttccttccatacccaatgtggtgacnnnnnnnnnnggcttggaaa |
288 |
Q |
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| T |
2736959 |
gatatggcttagtgggattaaatggataacatgttaggaaaaaaa---aaaaatgttccttccatacccaatgtggtgac--aaaaaaaaggcttggaaa |
2737053 |
T |
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| Q |
289 |
ttggaagatttgcttaaaatttaatgaaaacatctactgaaagatacttccaat |
342 |
Q |
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| T |
2737054 |
ttaaaagatttgcttaaaatttaatgaaaacatctactgaaagatacttccaat |
2737107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 2737092 - 2737130
Alignment:
| Q |
356 |
gaaagatacttccaataaattttataaacaaaaataacc |
394 |
Q |
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| T |
2737092 |
gaaagatacttccaataaattttataagcaaaaataacc |
2737130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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