View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_38 (Length: 393)
Name: NF1242_low_38
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 74 - 353
Target Start/End: Original strand, 2483622 - 2483897
Alignment:
| Q |
74 |
tgttcttattctatttttctttattttatatctgtacgtatttgtattgttaacatggtatgaagagcatggttcgatccgcttgaaccactaatcgctt |
173 |
Q |
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| T |
2483622 |
tgttcttattctatttttctttattttatatctgta----tttgtattgttaacatggtatcaagagcatggttcgatccgcttgaaccactaatcgctt |
2483717 |
T |
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| Q |
174 |
ctgccgtcgaattccaaaagtttgggattgttttaggtttgtcttttgaatattcgttatattgatagtgatttggttttcttaatttgttattttggtt |
273 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483718 |
ctgccgtcgaattccaaaagtttgggattgtttttggtttgtcttttgaatattcgttatattgatagtgatttggttttcttaatttgttattttggtt |
2483817 |
T |
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| Q |
274 |
ttcttagtttgttaaaaatattcagaggcattacaaattgattattgagtttcttcatgtgcagcaagtggcatatcttg |
353 |
Q |
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| T |
2483818 |
ttcttagtttgttaaaaatcttcagaggcattacaacttgattattgagtttcttcatgtgcagcaagtggcatatcttg |
2483897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 273
Target Start/End: Original strand, 2479191 - 2479359
Alignment:
| Q |
111 |
gtatttgtattgttaacatggtatgaagagcatggttcgatccgctt--gaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttta |
208 |
Q |
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|||| ||| |||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
2479191 |
gtatatgtgttgttaacattgtatgaagagcatggtttgatcctcttttgaaccactaatcgtttccaccgtcgaattccaaaagcttgggattgttttt |
2479290 |
T |
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| Q |
209 |
ggtttgtcttttgaatattcgt----tatattgatagtgatttggttttcttaatttgttattttggtt |
273 |
Q |
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| T |
2479291 |
ggtttgtcttttgaatattcgttatatatattgatagtgatttagttctcttgatttgttatgttggtt |
2479359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 1175506 - 1175437
Alignment:
| Q |
131 |
gtatgaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttggga |
200 |
Q |
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|||| ||||| |||||| |||| |||||||||||| ||||||| || ||||||| |||||||||||||| |
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| T |
1175506 |
gtatcaagagtatggtttgatcgtcttgaaccactagtcgcttccgctgtcgaatcccaaaagtttggga |
1175437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 3775795 - 3775671
Alignment:
| Q |
146 |
ttcgatccgc-ttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgttttaggtttgtcttttgaatattcgttatattgatagtga |
244 |
Q |
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|||||||||| |||||||||| ||||||||| |||| ||| |||||||||||||||| || | |||| |||||||| ||| ||||||| || ||| |
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| T |
3775795 |
ttcgatccgccttgaaccacttgtcgcttctgttatcgatttcaaaaagtttgggattgtgtttgatttgccttttgaagattgattatattaatcatga |
3775696 |
T |
|
| Q |
245 |
tttggttttcttaatttgttatttt |
269 |
Q |
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||||||| || || |||||||||| |
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| T |
3775695 |
tttggttctcccaacttgttatttt |
3775671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 24135082 - 24135127
Alignment:
| Q |
112 |
tatttgtattgttaacatggtatgaagagcatggttcgatccgctt |
157 |
Q |
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| T |
24135082 |
tatttgtattgttaagatggtatcaagagcgtggtttgatccgctt |
24135127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 3950617 - 3950697
Alignment:
| Q |
118 |
tattgttaacatggtatgaagagcatggttcgatccg-cttgaaccactaatcgcttctgccgtcgaattccaaaagtttg |
197 |
Q |
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| T |
3950617 |
tattgttaacatggtatcgaaagcatggtttgatccgccttgaaccacttgtcacttctgctatcgaatctcaaaagtttg |
3950697 |
T |
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