View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_40 (Length: 389)
Name: NF1242_low_40
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 25785457 - 25785115
Alignment:
| Q |
17 |
tgcacaacaaataatttatttgccataaccttttctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattgtgagtca |
116 |
Q |
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| T |
25785457 |
tgcacaacaaataatttatttgccataacctttcctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattgtgagtca |
25785358 |
T |
|
| Q |
117 |
ataaaacggcggactgattatcacaaagaacaacgggataggataatggaacaataagctcttttagcaaggtctgaacccaaagaacatcagcagtagc |
216 |
Q |
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||||||| |||||||||||||||| |||||||| |||||||| ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
25785357 |
ataaaactacggactgattatcacagagaacaacaggataggagaatggaacagtaagctctttctgcaaggtctaaacccaaagaacatcagcagtagc |
25785258 |
T |
|
| Q |
217 |
ttgagctaaggccatgtattttgcctctttgctaggtctggctacagcaggttgttttctggaccaccaagaaatgacattaggaccaaagaatataaca |
316 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
25785257 |
ttgagctaaggccctgtattttgcctctgtgctatatctggctacagcaggttgttttctggaccaccaagaaataacattaggaccaaagaatatgaca |
25785158 |
T |
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| Q |
317 |
actccagaagtggaccttctatcatcaggatatgatgatctgat |
360 |
Q |
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| T |
25785157 |
gctccagaagtggacc-tctatcatcaggatatgatgatctgat |
25785115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 347
Target Start/End: Original strand, 52662368 - 52662527
Alignment:
| Q |
188 |
gtctgaacccaaagaacatcagcagtagcttgagctaaggccatgtattttgcctctttgctaggtctggctacagcaggttgttttctggaccaccaag |
287 |
Q |
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||||| ||||| ||| ||||||| |||||||| || || ||| |||||| || ||| | || | |||||| ||| |||| || || |||||||||| | |
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| T |
52662368 |
gtctggacccagagagcatcagctgtagcttgtgccaaagccctgtattcagcttctgtacttgatctggccacaacaggctgcttcttggaccaccatg |
52662467 |
T |
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| Q |
288 |
aaatgacattaggaccaaagaatataacaactccagaagtggaccttctatcatcaggat |
347 |
Q |
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|||||| ||| ||||||||||| || || | ||||||||||| ||||| ||||| |||| |
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| T |
52662468 |
aaatgagattgggaccaaagaaaatggcagcaccagaagtggatcttctgtcatctggat |
52662527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 20030949 - 20030617
Alignment:
| Q |
13 |
aatatgcacaacaaataatttatttgccataaccttttctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattgtga |
112 |
Q |
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||||||||||||| | || | ||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
20030949 |
aatatgcacaacagacaactgctttgccaggaccttttctctaacaaagaaagggtcaatctccatgtgttttgtccttgagtgtaaaataggattgtga |
20030850 |
T |
|
| Q |
113 |
gtcaataaaacggcggactgattatcacaaagaacaacgggataggataatggaacaataagctcttttagcaaggtctgaacccaaagaacatcagcag |
212 |
Q |
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| |||||| || || ||||| || ||||| |||| ||| ||| |||| || |||||| | ||||| | || || ||||||| ||||||| |||| |||| |
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| T |
20030849 |
gccaataagactgctgactggttgtcacagagaataacaggagaggaaaaaggaacagtgagctc--tgagtaatgtctgaatccaaagagcatctgcag |
20030752 |
T |
|
| Q |
213 |
tagcttgagctaaggccatgtattttgcctctttgctaggtctggctacagcaggttgttttctggaccaccaagaaatgacattaggaccaaagaatat |
312 |
Q |
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| ||||||||||||||| |||||| ||| ||| |||| | || ||| ||| ||||||| ||||| ||||||||||| || ||||||||||||||||| || |
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| T |
20030751 |
tggcttgagctaaggccctgtattctgcttctgtgcttgatccggcaacaacaggttgctttctagaccaccaagagataacattaggaccaaagaaaat |
20030652 |
T |
|
| Q |
313 |
aacaactccagaagtggaccttctatcatcaggat |
347 |
Q |
| |
|
| || ||||||||||| |||||||||| ||||| |
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| T |
20030651 |
agcagaaccagaagtggatcttctatcattaggat |
20030617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 32456983 - 32457273
Alignment:
| Q |
17 |
tgcacaacaaataatttatttgccataaccttttctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattgtgagtca |
116 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||||||||| || |
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| T |
32456983 |
tgcacaacagataattgctttgccaggaccttttctctaacaaagaaaaggtcaacctccatgtgttttgttcttgagtgtaaaataggattgtgagcca |
32457082 |
T |
|
| Q |
117 |
ataaaacggcggactgattatcacaaagaacaacgggataggataatggaacaataagctcttttagcaaggtctgaacccaaagaacatcagcagtagc |
216 |
Q |
| |
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|||| || || ||||| |||||||| |||| ||| || | || || || ||| | ||||| | || || ||||||||||||||| |||| ||||| || |
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| T |
32457083 |
ataagactgctgactggttatcacagagaataacaggggaagaaaaagggacagtgagctc--tgagtaatgtctgaacccaaagagcatctgcagtggc |
32457180 |
T |
|
| Q |
217 |
ttgagctaaggccatgtattttgcctctttgctaggtctggctacagcaggttgttttctggaccaccaagaaatgacattaggaccaaagaatata |
313 |
Q |
| |
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||||||||| ||| || || | | |||| | |||||| ||| ||||||| ||||||||||||||||| || |||||||||||||| |||||| |
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| T |
32457181 |
ttgagctaaagcc----cttcagcttttgtgcttgatctggcaacaacaggttgctttctggaccaccaagagataacattaggaccaaaaaatata |
32457273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 3211986 - 3212172
Alignment:
| Q |
38 |
gccataaccttttctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattgtgagtcaataaaacggcggactgattat |
137 |
Q |
| |
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|||| ||||||||| || |||||||| |||||| ||||||| || |||||||| | |||||| || |||| |||| | || || || || ||||||| |
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| T |
3211986 |
gccaaaaccttttcccttacaaagaaaaggtcagtttccatatgcttggtcctggtgtgtaagatgagattatgagcaagtagtactgctgattgattat |
3212085 |
T |
|
| Q |
138 |
cacaaagaacaacgggataggataatggaacaataagctcttttagcaaggtctgaacccaaagaacatcagcagtagcttgagcta |
224 |
Q |
| |
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|||||| || | ||| | || |||||||| | || ||||| || || ||||||||||| |||||||||||||||||||| |||| |
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| T |
3212086 |
cacaaaaaatagtaggagaagaagatggaacagtgagttctttgagtaaagtctgaacccagagaacatcagcagtagcttgtgcta |
3212172 |
T |
|
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