View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_41 (Length: 375)
Name: NF1242_low_41
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 2064875 - 2064540
Alignment:
| Q |
11 |
tattaaacgtcagtgtgcaggatttgagagttaggagtgaacaaatgtaaagttagatgcacaagtcttgtcactagactcgctctaaggcgtttgaagg |
110 |
Q |
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| T |
2064875 |
tattaaacgtcagtgtgcaggatttgagagttaggagcgaacaaatgtaaagttagatgcacaagtcttgtcactagactcgctctaaagcgtttgaagg |
2064776 |
T |
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| Q |
111 |
ctttccctttagagtctcatgatatgcttgcatacattggaatatttatgtgcaagagaaatagtcttcaattttcaacccttcagaatcaaattgccca |
210 |
Q |
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| T |
2064775 |
ctttccctttagagtctcatgatatgcttgcatacattggaatatttatgtgcaagagaaatagtcttcaattttcaacccttcagaatcaaattgccca |
2064676 |
T |
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| Q |
211 |
aaactaacatccatagatgctgtttctttgttaagaaatttaattttctgtgcaggcaattccatcggttatggattgtagtgccaatataaaaccagaa |
310 |
Q |
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| T |
2064675 |
aaactaacatccatagatgctgtttctttgttaagaaatttaattttctgtgcaggcaattccatcggttatggattgtagtgccaatataaaaccagaa |
2064576 |
T |
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| Q |
311 |
gcttcagttagatgtgaaaacattgagggcagtttt |
346 |
Q |
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| T |
2064575 |
gcttcagttagatgtgaaaacattgagggcagtttt |
2064540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 2063978 - 2064030
Alignment:
| Q |
243 |
aagaaatttaattttctgtgcaggcaattccatcggttatggattgtagtgcc |
295 |
Q |
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| T |
2063978 |
aagaaattcaatcttttgtgcaggcaattccatcagttatggattgtagtgcc |
2064030 |
T |
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