View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_42 (Length: 369)
Name: NF1242_low_42
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 44667518 - 44667680
Alignment:
| Q |
1 |
attacacataccgacccacccctcaaatctttcatcctcttcattctcatcaatcacatcagaaaaatctagaagctcatacttaacatccaccaccaat |
100 |
Q |
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| T |
44667518 |
attacacataccgacccacccctcaaatctttcatcctcttcattctcatcaatcacatcagaaaaatctagaacctcatacttaacatccaccaccaat |
44667617 |
T |
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| Q |
101 |
taactactgccattatttttcttatatcccctcatcactcaccacactctacaatttatcatt |
163 |
Q |
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| T |
44667618 |
taactactgccattatttttcttttatcccctcatcactcaccacactctacaatttatcatt |
44667680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 200 - 331
Target Start/End: Original strand, 44667719 - 44667840
Alignment:
| Q |
200 |
atatcttccattaagcaatctcacctacacccacctctatatatctatacaactcttcttcctttctaatcaagtcaactcaactcaattcaatccttct |
299 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
44667719 |
atatctcccattaagcaatctcacctacacccacctctatatatctatacaactcttcttcctttct----------agtcaactcaattcaatccttct |
44667808 |
T |
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| Q |
300 |
ttttcttcaacaaatgacttctctctcacagg |
331 |
Q |
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| T |
44667809 |
ttttcttcaacaaatgacttctctttcacagg |
44667840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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