View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_45 (Length: 361)
Name: NF1242_low_45
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 13571532 - 13571876
Alignment:
| Q |
1 |
gaaggtattgtttgaataaaattaggttttgaatgatttattgccaaaggcaaatgttaagttgttatccttcttttgaaaaatcattaaagatgtaatc |
100 |
Q |
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| T |
13571532 |
gaaggtattgtttgaataaaatcaggttttgaatgatttattgccaaaggcaaatattaagttgttacccttcttttgaaaaatcattaaagatgtagtc |
13571631 |
T |
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| Q |
101 |
tcatctatgttgtttatttcttttcagataagactgaggagtcgttcaatgagtatatgaaatgctcattagtcgttcaatgagatattcatagtcggat |
200 |
Q |
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| T |
13571632 |
tcatccatgttgtttatttcttttcagataagactgaagagtcgttcaatgagtatatgaaatgctcattaatcgttcaatgagatattcaaagtcggat |
13571731 |
T |
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| Q |
201 |
cacattttaatgttagaactatgatctatatgattatgttgtatcttttgaagtattacaaataattctaagtttaatttcaagttcaaagttaagtata |
300 |
Q |
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| T |
13571732 |
cacattttaatgttagaactatgatcggtatgattatgttgtattttttaaagtattaca---aattctaagtttaatttcaagttcaaagttaagtatg |
13571828 |
T |
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| Q |
301 |
agcttttcttcaaaaatattacaaa-atttcaaagtttaatttcaaga |
347 |
Q |
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| T |
13571829 |
agcttttcttcaaaagtattacaaatagttcaaagtttaatttcaaga |
13571876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 13579023 - 13579090
Alignment:
| Q |
281 |
caagttcaaagttaagtataagcttttcttcaaaaatattacaaa-atttcaaagtttaatttcaaga |
347 |
Q |
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| T |
13579023 |
caagttcaaagttaagtataagattttctccaaaagtattacaaagagttccaagtttaatttcaaga |
13579090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 13578810 - 13578855
Alignment:
| Q |
195 |
tcggatcacattttaatgttagaactatgatctatatgattatgtt |
240 |
Q |
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| T |
13578810 |
tcgggtcacattttgatgttagaactatgatttatatgattatgtt |
13578855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 135
Target Start/End: Original strand, 13578733 - 13578763
Alignment:
| Q |
105 |
ctatgttgtttatttcttttcagataagact |
135 |
Q |
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| T |
13578733 |
ctatgttgtttatttcttttcagataagact |
13578763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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