View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_47 (Length: 358)
Name: NF1242_low_47
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 31 - 257
Target Start/End: Complemental strand, 18047194 - 18046967
Alignment:
| Q |
31 |
ttttgggtcagatgaaactatacatcaaaccaagaggaattgttaataaaatagacacccatatggcatgagaatnnnnnnn-ggaaaatgctatgaaat |
129 |
Q |
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| T |
18047194 |
ttttgggtgagatgaaactatacatcaaaccaagaggaattgttaataaaatagacacccatatggcatgagaataaaaaaaaggaaaatgctatgaaat |
18047095 |
T |
|
| Q |
130 |
taaatcaacagttatgttatattgacaaccaaagttgtcaccacaccgtatgtatatacagtagattccatttttccaacttttcatgtatcttgagatg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
18047094 |
taaatcaacagttatgttatattgacaaccaaagttgtcaccacaccgtatgtatatacgatagattccatttttccaacttttcatgtatcttgggatg |
18046995 |
T |
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| Q |
230 |
cgggctttagaaacaaagagtgtacatg |
257 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
18046994 |
cgggctttagaaacaaagagtgtacatg |
18046967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 257
Target Start/End: Original strand, 4938582 - 4938698
Alignment:
| Q |
141 |
ttatgttatattgacaaccaaagttgtcaccacaccgtatgtatatacagtagattccatttttccaacttttcatgtatcttgagatgcgggctttaga |
240 |
Q |
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| T |
4938582 |
ttatattatattgacaatcaaggttgtcaccacaccgaatgtatatatggtagatgctatttttccaacttttcctacaccttgggatgggggttttaga |
4938681 |
T |
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| Q |
241 |
aacaaagagtgtacatg |
257 |
Q |
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| T |
4938682 |
gacaaagagtgtacatg |
4938698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 18045692 - 18045636
Alignment:
| Q |
262 |
ataagagaaggggttcttactagcagaatcacagttccatctattcgaatggttatg |
318 |
Q |
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| T |
18045692 |
ataagagaaggggttctaactagcagaatcacggttccatctattcgaatggttatg |
18045636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 6129381 - 6129261
Alignment:
| Q |
137 |
acagttatgttatattgacaaccaaagttgtcaccacaccgtatgtatatacagtagattccatttttccaacttttcatgtatcttgagatgcgggctt |
236 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||| | ||||||| ||| |
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| T |
6129381 |
acagatatgttatattgacaaccaaagttgtcacaacactgtatgtatatacgttagattccattttttcaacttttcatgtatctcgggatgcggactt |
6129282 |
T |
|
| Q |
237 |
tagaaacaaagagtgtacatg |
257 |
Q |
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|||| ||||||||| |||||| |
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| T |
6129281 |
tagagacaaagagtatacatg |
6129261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 348
Target Start/End: Original strand, 48367607 - 48367693
Alignment:
| Q |
262 |
ataagagaaggggttcttactagcagaatcacagttccatctattcgaatggttatgtctaaattgctcaaaccaaaccgagaatta |
348 |
Q |
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||||||||||| ||||||| ||||||| |||| ||||| || ||||||| | |||||||||||||||||||||||| | ||||||| |
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| T |
48367607 |
ataagagaaggtgttcttagtagcagagtcacggttccctccattcgaactgctatgtctaaattgctcaaaccaaatccagaatta |
48367693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 348
Target Start/End: Complemental strand, 13980002 - 13979918
Alignment:
| Q |
262 |
ataagagaaggggttcttactagcagaatcacagttccatctattcgaatggttatgtctaaattgctcaaaccaaaccgagaatta |
348 |
Q |
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| T |
13980002 |
ataagggaaggagttcttagtagtagagtcacagatccatcgattcgaatc--tatgtctaaattgctcaaaccaaatccagaatta |
13979918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 33279463 - 33279429
Alignment:
| Q |
141 |
ttatgttatattgacaaccaaagttgtcaccacac |
175 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
33279463 |
ttatgttatattgaaaaccaaagttgtcaccacac |
33279429 |
T |
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