View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_48 (Length: 357)

Name: NF1242_low_48
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_48
NF1242_low_48
[»] chr8 (1 HSPs)
chr8 (42-341)||(41781634-41781932)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 41781634 - 41781932
Alignment:
Q  42 aatgtaacaaaattttgtacaacataaaatgctggnnnnnnntgtgcctaattgtctaattcagattaagattacatttcataaattcatagcatcataa 141  Q
    |||||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41781634 aatgtaacaaaattttgtacaacataaaatgctggaaaaaaatgtgccgaattgtctaattcagattaagattacatttcataaattcatagcatcataa 41781733  T
Q  142 caactagtaccatttgattggaatttattgtttgtacatatatcctctagattcgattgtgatgtttttgaaactggaattttatgttgccttttctatg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41781734 caactagtaccatttgattggaatttattgtttgtacatatatcctctagattcgattgtgatgtttttgaaactggaattttatgttgccttttctatg 41781833  T
Q  242 tttctcttcttgttatgatttatcaatgttgttgctttttcttcccccctttatttacaagttgtttttattttgaccaagttgagtttgttagattcat 341  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41781834 tttctcttcttgttgtgatttatcaatgttgttgctttttcttcccccctttatttacaagttg-ttttattttgaccaagttgagtttgttagattcat 41781932  T

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