View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_5 (Length: 692)
Name: NF1242_low_5
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 83 - 678
Target Start/End: Complemental strand, 30902829 - 30902234
Alignment:
| Q |
83 |
aattattaaaaacaaacattttcctaataacatgactagaatattattacaatccatttcctccgccgcaccaccgccggactccgccgcctcattagaa |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30902829 |
aattattaaaaacaaacattttcctaataacatgactagaatattattacaatccatttcctccgccgcaccaccgccggactccgccgcctcattagaa |
30902730 |
T |
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| Q |
183 |
tccgacttcgtcgtcatcctcgccgctctcctctgcgctctaatctccgtcgtgggtctcaccgccattgcccgttgcgcctggctccgccgtacccccg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30902729 |
tccgacttcgtcgtcatcctcgccgctctcctctgcgctctaatctccgtcgtgggtctcaccgccattgcccgttgcgcctggctccgccgtacccccg |
30902630 |
T |
|
| Q |
283 |
tcgccggagcatcaccggcgacggcgatggccaacaaaggtctcaaaaagaaggttctcaattcacttccgaaattcacctacctcgacgacactcccgg |
382 |
Q |
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||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30902629 |
tcgccggagcatcaccgtcggcggcggtggccaacaaaggtctcaaaaagaaggttctcaattcacttccgaaattcacctacctcgacgacactcccgg |
30902530 |
T |
|
| Q |
383 |
aaaatgggtcgtctcatcggagtgcgccatttgtatctcggagttcaccgccggtgaggaggttcgggtgcttcctcagtgtggtcatggcttccgcgtg |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30902529 |
aaaatgggtcgtctcatcggagtgcgccatttgtatctcggagttcaccgccggtgaagaggttcgggtgcttcctcagtgtggtcatggcttccacgtg |
30902430 |
T |
|
| Q |
483 |
gcatgtgttgacacgtggcttgggtctcactctgcttgcccttcttgccgtgctccgtttgccgttgctaggtgtcagaaatgtgggctttagcaaccga |
582 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30902429 |
gcatgtgttgacacgtggcttgggtctcactcttcttgcccttcttgccgtgctccgtttgccgttgctaggtgtcagaaatgtgggctttatcaaccga |
30902330 |
T |
|
| Q |
583 |
cggctgccggagaagttgccggtgaaacggaacagaaaactgccggcggcgagaatgtagaagttgttgttgttaatgctaattgtaatggtaata |
678 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30902329 |
cggctgccggagaagttgccggtgaaacggaacagaaaactgccggcggcgagaatgtagaagttgttgttgttaatgctaattgtaatggtaata |
30902234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30902916 - 30902874
Alignment:
| Q |
1 |
tacctcaattattcaacttcccaaaacacaacacaacataaca |
43 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30902916 |
tacctcaattattcaacttcccaaaacacaacacaacacaaca |
30902874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 529
Target Start/End: Original strand, 9941063 - 9941187
Alignment:
| Q |
405 |
tgcgccatttgtatctcggagttcaccgccggtgaggaggttcgggtgcttcctcagtgtggtcatggcttccgcgtggcatgtgttgacacgtggcttg |
504 |
Q |
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||||| |||||| ||||||| ||| ||||||| || ||| | || || ||||| |||||||| ||||| || | |||||| ||| |||| || ||||||| |
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| T |
9941063 |
tgcgcgatttgtctctcggatttcgccgccggcgatgagatccgtgttcttccacagtgtggacatggttttcacgtggcttgtattgatacatggcttg |
9941162 |
T |
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| Q |
505 |
ggtctcactctgcttgcccttcttg |
529 |
Q |
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|||| ||||| |||| |||||||| |
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| T |
9941163 |
ggtcacactcatcttgtccttcttg |
9941187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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