View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_50 (Length: 350)
Name: NF1242_low_50
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 3743727 - 3743878
Alignment:
| Q |
71 |
aaatctttcctttatatgtaaattttatatgctatttaccactcgtctaatagtaatcttttgttcaccaaaattttctcacagctctattccaaaaaca |
170 |
Q |
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| T |
3743727 |
aaatcttttctttatatgtaaattttatatgctatttaccactcatctaatagtaatcttttgttgaccaaaattttctcacagctctattccaaaaaca |
3743826 |
T |
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| Q |
171 |
aaactaaagtcttaatatttcgccaaaaactaaatttctatgtttgggatat |
222 |
Q |
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| T |
3743827 |
aaactaaagtcttaatatttcgccaaaaactaaatttctatgtttgggatat |
3743878 |
T |
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Back To:
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 335
Target Start/End: Original strand, 3744770 - 3744870
Alignment:
| Q |
236 |
tgtttgaagt-attaagtatccatgacgtagttagtatagcaaaattttttgaattagaagaaggaattattattannnnnnncttttgacaccttcata |
334 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3744770 |
tgtttgaagttattaagtatccatgacgtagttagtatagcaaaattttttgaattagaagaaggaattattattatttttttcttttgacaccttcata |
3744869 |
T |
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| Q |
335 |
g |
335 |
Q |
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| T |
3744870 |
g |
3744870 |
T |
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