View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_64 (Length: 326)
Name: NF1242_low_64
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 11712179 - 11711973
Alignment:
| Q |
40 |
aagaacttcatcattggtagtttcaatcgaaccatcgccagagaggcggatatcaggccttcccaagagggcctgagtttgcttttcaatcagtgatata |
139 |
Q |
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| T |
11712179 |
aagaacttcatcattggtagtttcaatcgaaccatcgccagagaggcggatatcaggccttccaaagagggcctgagtttgcttttcaatcaatgatata |
11712080 |
T |
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| Q |
140 |
gcttccttggagcgtacggtagcaagtctctgaagtgcctccgtatccaactgcgtcacataagctcgcagtccggatgatttgccttcaccatcaccag |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11712079 |
gcttccttggagcgtacggtagcaagtctctgaagtgcctccgtatccaactgcgtcacataagctcgcagtccggatgatttgccttcaccatcaccag |
11711980 |
T |
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| Q |
240 |
tattcat |
246 |
Q |
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||||||| |
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| T |
11711979 |
tattcat |
11711973 |
T |
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