View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_7 (Length: 652)
Name: NF1242_low_7
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 40 - 645
Target Start/End: Complemental strand, 11712179 - 11711574
Alignment:
| Q |
40 |
aagaacttcatcattggtagtttcaatcgaaccatcgccagagaggcggatatcaggccttccaaagagggcctgagtttgcttttcaatcagtgatata |
139 |
Q |
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| T |
11712179 |
aagaacttcatcattggtagtttcaatcgaaccatcgccagagaggcggatatcaggccttccaaagagggcctgagtttgcttttcaatcaatgatata |
11712080 |
T |
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| Q |
140 |
gcttccttggagcgtacggtagcaagtctctgaagtgcctccgtatccaactgcgtcacataagctcgcagtccggatgatttgccttcaccatcaccag |
239 |
Q |
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| T |
11712079 |
gcttccttggagcgtacggtagcaagtctctgaagtgcctccgtatccaactgcgtcacataagctcgcagtccggatgatttgccttcaccatcaccag |
11711980 |
T |
|
| Q |
240 |
tattcatgtcatccatttcataataaccttcgtcatcaggatagatcctaatcaaggaatctgaatcccagagcttgtttggtggcgatggttcatcaaa |
339 |
Q |
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| T |
11711979 |
tattcatgtcatccatttcataataaccttcgtcatcaggatagatcctaatcaaggaatctgaatcccagagcttgtttggtggcgatggttcatcaaa |
11711880 |
T |
|
| Q |
340 |
actaatattttctttacccaaatcctgtggaagtgttcccactgacctctccagttgaaagcgttcatcaacccgtttgagaaaatatccatacattatt |
439 |
Q |
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| T |
11711879 |
actaatattttctttacccaaatcctgtggaagtgttcccactgacctctccagttgaaagcgttcatcaacccgtttgagaaaatatccatacattatt |
11711780 |
T |
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| Q |
440 |
gaagcagcgtataacttacccagcttgattttgctaatctgaataattgtctggagaggacccacagtccgttctcctagtaccagagacaagtgactct |
539 |
Q |
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| T |
11711779 |
gaagcagcgtataacttacccagcttgattttgctaatctgaataattgtctgaagaggacccacagcccgttctcctagtaccagagacaagtgactct |
11711680 |
T |
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| Q |
540 |
gtatcatctcaaatgcctctgaagaatgaacagcttctaacttaaactcttgatttggccatgaatccacttgttcattaggatctgaggttgctgatat |
639 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11711679 |
gtatcatctcaaatgcctctgaagaatgaacagcttctaacttaaactcttgatttggccatgaatccacttgttcattaggatctgaggttgctgatat |
11711580 |
T |
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| Q |
640 |
tcttgg |
645 |
Q |
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| T |
11711579 |
ttttgg |
11711574 |
T |
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