View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_71 (Length: 317)
Name: NF1242_low_71
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 25433465 - 25433573
Alignment:
| Q |
197 |
tgaattgttacataacagaaaacaaagacatgataagaattttctttgttttatagtttcctttcacctgagatgatcattgtcaattttcctgacattt |
296 |
Q |
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| T |
25433465 |
tgaattgttacataacagaaaacaaagacatgataagaattttctttgttttatagttttcattcacctgagatgatcattgtcaattttcctgacattt |
25433564 |
T |
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| Q |
297 |
tcatatatt |
305 |
Q |
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| T |
25433565 |
tcatatatt |
25433573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 25433271 - 25433422
Alignment:
| Q |
2 |
ggattgagcaatcatccatttaaatttgatggnnnnnnn-tcttgttcctttaagttagtctgtaagtactagtttgnnnnnnnnnnnca-taatcaaat |
99 |
Q |
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| T |
25433271 |
ggattgagcaatcatccatttaaatttgatggaaaaaaaatcttgttcctt-aagttagtctgtaagttctagtttgaaagaaaataaaaataatcaaat |
25433369 |
T |
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| Q |
100 |
caaaccaatgtatatttaatcgattggaatttttttggactgaaatgaattgc |
152 |
Q |
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| T |
25433370 |
caaaccaatgtatatttaatcgattggaatttttttgtactgaaatgaattgc |
25433422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 25437669 - 25437723
Alignment:
| Q |
197 |
tgaattgttacataacagaaaacaaagacatgataagaattttctttgttttata |
251 |
Q |
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|||||||||||||| |||||||||| |||||| ||| ||||||| || ||||||| |
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| T |
25437669 |
tgaattgttacatagcagaaaacaaggacatgctaataattttccttattttata |
25437723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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