View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_74 (Length: 312)
Name: NF1242_low_74
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 5571220 - 5571364
Alignment:
| Q |
76 |
aattcttcccaacatcaagaacacctctctgaatcaacatcctacaaaaaggtcccacatgagtaaaatagttatctgacagtgaaaaattcaccaaatt |
175 |
Q |
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| T |
5571220 |
aattcttcccaacatcaagaacacctctttgaatcaacatcctacaaaaaggtcccacatgagtaaaatagttatctgacagtgaaaaattcaccaaatt |
5571319 |
T |
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| Q |
176 |
ctccaaccctgcacacacaaaatcaggcaccattccataaaacat |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5571320 |
ctccaaccctgcacacacaaaatcaggcaccattccataaaacat |
5571364 |
T |
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