View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_78 (Length: 309)
Name: NF1242_low_78
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_78 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 145 - 309
Target Start/End: Original strand, 10356269 - 10356433
Alignment:
| Q |
145 |
gacaaatctacttcaaacaacgacgttgcagacataaaaaatgcaggtaaggagcttgcacagacatagacaccaaaacaggacacatacatattaccac |
244 |
Q |
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| T |
10356269 |
gacaaatctacttcaaacaacgacgttgcagacagaaaaaatgcaggtaaggagcttgcacagacacaaacaccaaaacaggacacatacatattaccac |
10356368 |
T |
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| Q |
245 |
cagtcaactatcactccttactggctcccgcttcattatgttgtcattgccgcataaaagtttcc |
309 |
Q |
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| T |
10356369 |
cagtcaactatcactccttactggctcccgtttcattatgttgtcgttgccgcataaaagtttcc |
10356433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 10356199 - 10356245
Alignment:
| Q |
89 |
ttaaacacagccagagaaagctaagaatgaggaaactaagtagccag |
135 |
Q |
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| T |
10356199 |
ttaaacgcagccagagaaagctaagaatgaagaaactaagcagccag |
10356245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 87 - 282
Target Start/End: Complemental strand, 22008316 - 22008107
Alignment:
| Q |
87 |
acttaaacacagccagagaaagctaagaatgaggaaactaagtagccag--------------gaggttgatgacaaatctacttcaaacaacgacgttg |
172 |
Q |
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| T |
22008316 |
acttaaacgcagccagagaaagctaagaatgaagaaactaagcagccagagagcaaagctcttgaggtcgaggacaaatctacttcaaacaacgacgttg |
22008217 |
T |
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| Q |
173 |
cagacataaaaaatgcaggtaaggagcttgcacagacatagacaccaaaacaggacacatacatattaccaccagtcaactatcactccttactggctcc |
272 |
Q |
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| T |
22008216 |
cagacataaaaaatgcaggtaaggagcttgcacagacacagacaccaaaacaggacacatacatattaccaccagtcaactatcactccttactggctcc |
22008117 |
T |
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| Q |
273 |
cgcttcatta |
282 |
Q |
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|||||||||| |
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| T |
22008116 |
cgcttcatta |
22008107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 3123857 - 3123790
Alignment:
| Q |
136 |
gaggttgatgacaaatctacttcaaacaacgacgttgcagacataaaaaatgcaggtaaggagcttgc |
203 |
Q |
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| T |
3123857 |
gaggtggaggacaaatctacttcaaacaacgatgttgcagacagaaacaatgcaggtaaggatcttgc |
3123790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 3123916 - 3123872
Alignment:
| Q |
91 |
aaacacagccagagaaagctaagaatgaggaaactaagtagccag |
135 |
Q |
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| T |
3123916 |
aaacgcagccagagaaagctaaggatgaagaaactaagcagccag |
3123872 |
T |
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