View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1242_low_81 (Length: 301)
Name: NF1242_low_81
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_81 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 37516909 - 37517087
Alignment:
| Q |
59 |
aatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgact |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37516909 |
aatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgaat |
37517008 |
T |
|
| Q |
159 |
ggttctatatatctagcacaccactagaggaagaaatactttcacatttagtatatattttagaacttaactctgcctatg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37517009 |
ggttctatatatctagcacaccactagaggaagaaatactttcacatttag--tatattttagaacttaactctgcctatg |
37517087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 14843079 - 14843257
Alignment:
| Q |
59 |
aatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgact |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14843079 |
aatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgaat |
14843178 |
T |
|
| Q |
159 |
ggttctatatatctagcacaccactagaggaagaaatactttcacatttagtatatattttagaacttaactctgcctatg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
14843179 |
ggttctatatatctagcacaccactagaggaagaaatactttcacatttag--tatatttgagaacttaactctgcctatg |
14843257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University