View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_82 (Length: 300)
Name: NF1242_low_82
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 41620705 - 41620412
Alignment:
| Q |
1 |
ctcttccctcttgttcattactagtatcatcgttatcatccatcgcatgacttctcttttctcttggtactaatgaagctgaaacctcttcaaccatcac |
100 |
Q |
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| T |
41620705 |
ctcttccctcttgttcattactagtatcatcgttatcatccatcgcatgacttctcttttctcttggtactaatgaagctgaaacctcttcaaccatcac |
41620606 |
T |
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| Q |
101 |
tggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcaatgaccactggatcaggttgtgccacaccatagtagttt |
200 |
Q |
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| T |
41620605 |
tggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcattgaccactggatcaggttgtgccacaccatagtagttt |
41620506 |
T |
|
| Q |
201 |
tgctctactaaaggagtttgtagttctaagtaagaagagtcaaattcgccaacaaggttaaccgaatcagactcacatgaattatctgtggtgc |
294 |
Q |
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| T |
41620505 |
tgctctactaaaggagtttgtagttctaagtaagaagagtcaaattcgccaacaaggttaaccgaatcagactcacatgaattatcagtggtgc |
41620412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 41624051 - 41623762
Alignment:
| Q |
1 |
ctcttccctcttgttcattactagtatcatcgttatcatccatcgcatgacttctcttttctcttggtactaatgaagctgaaacctcttcaaccatcac |
100 |
Q |
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||||||| ||||||||||||| |||| ||| | || ||||||| ||||||||| |||||| |||||| ||||| |||||| |||| ||| |||| |
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| T |
41624051 |
ctcttccttcttgttcattacaagtaccattatcattatccatcttatgacttcttttttct---ggtactgttgaaggtgaaacttctttcaccgtcac |
41623955 |
T |
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| Q |
101 |
tggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcaatgaccactggatcaggttgtgccacaccatagtagttt |
200 |
Q |
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| T |
41623954 |
tggctgaatgtcattccaactccaagttccgttgcaaaaatgtttatcacctcgtgtctcaatgacaactggatcagcttctgtcaagtcatcgtagttt |
41623855 |
T |
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| Q |
201 |
tgctctactaaaggagtttgtagttctaagtaagaagagtcaaattcgccaacaaggttaaccgaatcagactcacatgaattatctgtggtg |
293 |
Q |
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| |||| ||||||||||||||||| || | |||||||||| |||||| | ||| |||| ||| ||| ||| ||| |||| ||||| |||||| |
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| T |
41623854 |
ttttctattaaaggagtttgtagttgtatggaagaagagtcgaattcgacgacatggttgacccaattagattcatatgagttatcagtggtg |
41623762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41627012 - 41626791
Alignment:
| Q |
1 |
ctcttccctcttgttcattactagtatcatcgttatcatccatcgcatgacttctcttttctcttggtactaatgaagctgaaacctcttcaaccatcac |
100 |
Q |
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||||||||||||||||||||| |||||||| | ||||||| | ||||||| |||||| |||||| ||||| | |||| ||||| | | |||| |
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| T |
41627012 |
ctcttccctcttgttcattacaagtatcattatctctatccatcttacgacttcttttttct---ggtactgttgaaggtaaaacttcttccaacgtcac |
41626916 |
T |
|
| Q |
101 |
tggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcaatgaccactggatcaggttgtgccacaccatagtagttt |
200 |
Q |
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||| ||||| |||||||||||||||||||| || ||||||||||||||| ||||| ||| ||||| |||||||||| || || || ||||||||||| |
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| T |
41626915 |
tggttgaatgtcattccaactccaagttccgttgtgaaaatggttagcaccttgtgtctcgatgacaactggatcagcttctgtcaagtcatagtagttt |
41626816 |
T |
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| Q |
201 |
tgctctactaaaggagtttgtagtt |
225 |
Q |
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| |||| ||||||| ||| ||||| |
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| T |
41626815 |
ttttctattaaaggactttttagtt |
41626791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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