View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_84 (Length: 298)

Name: NF1242_low_84
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_84
NF1242_low_84
[»] chr7 (2 HSPs)
chr7 (179-298)||(2686115-2686234)
chr7 (59-174)||(2686284-2686408)
[»] chr8 (3 HSPs)
chr8 (85-168)||(18637632-18637715)
chr8 (121-167)||(42579893-42579939)
chr8 (89-174)||(36024135-36024220)
[»] chr1 (5 HSPs)
chr1 (61-170)||(6689090-6689208)
chr1 (84-174)||(17823740-17823830)
chr1 (85-171)||(43468354-43468440)
chr1 (193-256)||(6689276-6689339)
chr1 (137-173)||(38069493-38069529)
[»] chr4 (4 HSPs)
chr4 (85-165)||(56337948-56338028)
chr4 (89-174)||(18734167-18734252)
chr4 (89-174)||(41381587-41381672)
chr4 (89-174)||(15342444-15342529)
[»] chr2 (4 HSPs)
chr2 (85-160)||(6849212-6849287)
chr2 (125-168)||(11579987-11580030)
chr2 (106-165)||(32617596-32617655)
chr2 (106-171)||(28917205-28917270)
[»] chr3 (3 HSPs)
chr3 (86-174)||(46189126-46189214)
chr3 (123-168)||(34434265-34434310)
chr3 (137-173)||(2427722-2427758)


Alignment Details
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 179 - 298
Target Start/End: Complemental strand, 2686234 - 2686115
Alignment:
Q  179 ttccataaaatccacacacacaatagccaacgtagctgcatgaaggatcgtcgggtcctcagtattcctaaagcgttaatatatatttatccccatgaaa 278  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  2686234 ttccataaaatccacacacacaatagccaaagtagctacatgaaggatcgtcgggtcctcagtgttcctaaagcgttaatatatatttatccccatgtaa 2686135  T
Q  279 tattatcggtttctggttta 298  Q
    ||||||||||||||||||||    
T  2686134 tattatcggtttctggttta 2686115  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 2686408 - 2686284
Alignment:
Q  59 agcataggtcagtcgatacccagaca---------gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaagg 149  Q
    ||||||||||||||||||||||||||         |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  2686408 agcataggtcagtcgatacccagacactgtaacgggtccgaccgccatctttgagtaccaaatacaaaagtggcattattagcctttagccaccacaaag 2686309  T
Q  150 aattaaatttaaccttttccaacaa 174  Q
    |||| ||||||||||||||||||||    
T  2686308 aattcaatttaaccttttccaacaa 2686284  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 18637715 - 18637632
Alignment:
Q  85 gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttc 168  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  18637715 gtccgaccaccttctttaagtaccaaaaacaaaagcggcattattagcctttagccacctcaaagaattaaatttaacattttc 18637632  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 42579939 - 42579893
Alignment:
Q  121 ggcattattagcctttagccaccacaaggaattaaatttaacctttt 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  42579939 ggcattattagcctttagccaccacaaggaatcaaatttaacctttt 42579893  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 36024135 - 36024220
Alignment:
Q  89 gaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 174  Q
    |||||||| ||||||||||| ||| ||||||     ||||| || |||||||||||||| |||||||| |||||||||||||||||    
T  36024135 gaccaccacctttgagtacctaatgcaaaagaaatgttattggcttttagccaccacaacgaattaaacttaaccttttccaacaa 36024220  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 6689090 - 6689208
Alignment:
Q  61 cataggtcagtcgatacccagaca---------gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaa 151  Q
    ||||||||||||||||||||||||         ||||||||| ||||||||||||| ||| | ||||| ||| |||||| | |||||||||||||| |||    
T  6689090 cataggtcagtcgatacccagacacggtaacgggtccgaccaacatctttgagtacaaaaaataaaagtggcgttattaacttttagccaccacaaagaa 6689189  T
Q  152 ttaaatttaaccttttcca 170  Q
    |||||||||||||||||||    
T  6689190 ttaaatttaaccttttcca 6689208  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 17823740 - 17823830
Alignment:
Q  84 agtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 174  Q
    ||||| ||||||||||||||||||| || ||||||| | |||||||| | |||||||||||||| ||||| |||||||| |||| ||||||    
T  17823740 agtccaaccaccatctttgagtacctaaaacaaaagtgacattattaacttttagccaccacaaagaattgaatttaacatttttcaacaa 17823830  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 43468440 - 43468354
Alignment:
Q  85 gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaa 171  Q
    ||||||||| ||| ||| | ||||||| ||||||  | |||||||||| || ||||||||||  |||||||||||||| ||||||||    
T  43468440 gtccgaccatcatttttaaataccaaaaacaaaaatgacattattagctttaagccaccacatagaattaaatttaacattttccaa 43468354  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 6689276 - 6689339
Alignment:
Q  193 cacacacaatagccaacgtagctgcatgaaggatcgtcgggtcctcagtattcctaaagcgtta 256  Q
    ||||||||||||||||   ||||||||||| |||| ||||||||||  | ||||||||||||||    
T  6689276 cacacacaatagccaaaagagctgcatgaaagatcttcgggtcctcgatgttcctaaagcgtta 6689339  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 38069493 - 38069529
Alignment:
Q  137 agccaccacaaggaattaaatttaaccttttccaaca 173  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  38069493 agccaccacaacgaattaaacttaaccttttccaaca 38069529  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 56338028 - 56337948
Alignment:
Q  85 gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaacctt 165  Q
    |||| ||||||||||||||| |||| | ||||||| |||||| ||||| |||||||||||||| ||| || ||||||||||    
T  56338028 gtccaaccaccatctttgagaaccataaacaaaagtggcattgttagcttttagccaccacaaagaagtatatttaacctt 56337948  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 18734167 - 18734252
Alignment:
Q  89 gaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 174  Q
    |||||||| ||||||||||| ||| ||||||     ||||| || |||||||||||||| |||||||| |||||||||||||||||    
T  18734167 gaccaccacctttgagtacctaatgcaaaagaaatgttattggcttttagccaccacaacgaattaaacttaaccttttccaacaa 18734252  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 41381587 - 41381672
Alignment:
Q  89 gaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 174  Q
    |||||||| ||||||||||| ||| ||||||     ||||| || |||||||||||||| |||||||| |||||||||||||||||    
T  41381587 gaccaccacctttgagtacctaatgcaaaagaaatgttattggcttttagccaccacaacgaattaaacttaaccttttccaacaa 41381672  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 15342444 - 15342529
Alignment:
Q  89 gaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 174  Q
    |||||||| ||||||| ||| || ||||||||  | ||||| || || |||||||||||  ||||||| || ||||||||||||||    
T  15342444 gaccaccacctttgagaacctaaaacaaaagcaacgttattggctttaagccaccacaacaaattaaacttgaccttttccaacaa 15342529  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 6849212 - 6849287
Alignment:
Q  85 gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaattta 160  Q
    ||||||||||||| | ||||||||||| ||||||| ||||||||| || |||||||| || || ||||||||||||    
T  6849212 gtccgaccaccatttctgagtaccaaaaacaaaagtggcattatttgcttttagccaacataaagaattaaattta 6849287  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 11580030 - 11579987
Alignment:
Q  125 ttattagcctttagccaccacaaggaattaaatttaaccttttc 168  Q
    ||||||||||||||||||||||| |||| |||||||||||||||    
T  11580030 ttattagcctttagccaccacaaagaatgaaatttaaccttttc 11579987  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 32617596 - 32617655
Alignment:
Q  106 accaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaacctt 165  Q
    |||||| ||||||||||||||||||||||  | ||||||  |||||| ||||||||||||    
T  32617596 accaaaaacaaaagcggcattattagcctgcaaccaccagtaggaatgaaatttaacctt 32617655  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 28917270 - 28917205
Alignment:
Q  106 accaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaa 171  Q
    |||||| ||||||| |||||||||| |||| | ||||||  |||||| |||||||||||| |||||    
T  28917270 accaaaaacaaaagaggcattattaaccttcaaccaccaataggaatgaaatttaaccttctccaa 28917205  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 46189126 - 46189214
Alignment:
Q  86 tccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 174  Q
    ||||||||||||||||||| |||| | ||||||  | |||| ||| | |||||||||||||| ||  || |||||||||| ||||||||    
T  46189126 tccgaccaccatctttgagaaccataaacaaaattgacattgttaacttttagccaccacaaagatgtatatttaaccttatccaacaa 46189214  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 34434310 - 34434265
Alignment:
Q  123 cattattagcctttagccaccacaaggaattaaatttaaccttttc 168  Q
    ||||||||||||| ||||||||||| |||| | |||||||||||||    
T  34434310 cattattagccttaagccaccacaacgaatgatatttaaccttttc 34434265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 2427758 - 2427722
Alignment:
Q  137 agccaccacaaggaattaaatttaaccttttccaaca 173  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  2427758 agccaccacaatgaattaaacttaaccttttccaaca 2427722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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