View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_85 (Length: 297)

Name: NF1242_low_85
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_85
NF1242_low_85
[»] chr5 (5 HSPs)
chr5 (6-188)||(29046946-29047128)
chr5 (105-188)||(5343745-5343828)
chr5 (105-188)||(24855918-24856001)
chr5 (105-182)||(6432415-6432492)
chr5 (144-188)||(1710438-1710482)
[»] chr4 (6 HSPs)
chr4 (141-188)||(53511572-53511619)
chr4 (141-188)||(47985720-47985767)
chr4 (142-188)||(13721398-13721444)
chr4 (142-188)||(16684285-16684331)
chr4 (142-182)||(40693021-40693061)
chr4 (142-181)||(55612424-55612463)
[»] chr3 (8 HSPs)
chr3 (105-188)||(21450171-21450254)
chr3 (142-180)||(44207630-44207668)
chr3 (142-182)||(8486548-8486588)
chr3 (142-182)||(48062234-48062274)
chr3 (142-182)||(49327356-49327396)
chr3 (142-181)||(16482913-16482952)
chr3 (142-181)||(47374807-47374846)
chr3 (142-188)||(30388961-30389007)
[»] chr2 (5 HSPs)
chr2 (145-188)||(15113387-15113430)
chr2 (142-184)||(41961745-41961787)
chr2 (142-188)||(43333862-43333908)
chr2 (142-180)||(5464424-5464462)
chr2 (105-182)||(34948535-34948612)
[»] chr1 (8 HSPs)
chr1 (142-188)||(10223207-10223253)
chr1 (105-188)||(3475269-3475352)
chr1 (105-188)||(18272316-18272399)
chr1 (105-188)||(18276970-18277053)
chr1 (105-188)||(39598259-39598342)
chr1 (142-188)||(7564619-7564665)
chr1 (142-188)||(29946808-29946854)
chr1 (142-188)||(12524948-12524994)
[»] chr8 (4 HSPs)
chr8 (142-182)||(42190600-42190640)
chr8 (105-182)||(24830807-24830884)
chr8 (142-188)||(11767-11813)
chr8 (144-188)||(23420993-23421037)
[»] chr7 (7 HSPs)
chr7 (142-188)||(7255432-7255478)
chr7 (142-188)||(26792041-26792087)
chr7 (142-188)||(29332324-29332370)
chr7 (142-188)||(43749234-43749280)
chr7 (105-180)||(35585066-35585141)
chr7 (142-188)||(15032584-15032630)
chr7 (105-182)||(29739204-29739281)
[»] chr6 (2 HSPs)
chr6 (142-188)||(34949577-34949623)
chr6 (142-182)||(480370-480410)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 29046946 - 29047128
Alignment:
Q  6 gtcgaataatattgtaaaggtctgattgatgatataaagctgggtgggtttttctgaaacaaaagaggaacaatagtgagggaaataaaaagacaaatat 105  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29046946 gtcgaatcttattgtaaaggtctgattgatgatataaagctgggtggatttttcagaaacaaaagaggaacaatagtgagggaaataaaaagacaaatat 29047045  T
Q  106 tttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||  ||||||||||| |||||         ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29047046 tttggacagttttgaatgaataacacgtttttcttaacttccaaattatctatgacttcttttaagctataaaaaggtttgga 29047128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 5343745 - 5343828
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||| |||||||||||||||||          |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  5343745 ttttggacggttttgaatgaaaaacacgtttttcttgacttccaaattacctatgacttgttttaggctataaaaaggcttgga 5343828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 24855918 - 24856001
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||| |||||||||||||||||          |||||||||||| |||||||||| |||| ||||||||||||||||||    
T  24855918 ttttggacgattttgaatgaaaaacacgttttccttgacttccaaattacctatgacttgctttaggctataaaaaggtttgga 24856001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 6432415 - 6432492
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    ||||||||| |||||||||||||||||          |||||||||||| ||||||||||||||| ||||||||||||    
T  6432415 ttttggacggttttgaatgaaaaacacgttttccttgacttccaaattacctatgacttgttttaggctataaaaagg 6432492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 1710438 - 1710482
Alignment:
Q  144 ttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||    
T  1710438 ttccaaattacctatgacttgttttaggctataaaaaggcttgga 1710482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 53511619 - 53511572
Alignment:
Q  141 aacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  53511619 aacttccaaattacctatgacttgttttaggctataaaaaggtttgga 53511572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 47985720 - 47985767
Alignment:
Q  141 aacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||||    
T  47985720 aacttccaaattacctatgacttgttataggctataaaaaggtttgga 47985767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 13721444 - 13721398
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  13721444 acttccaaattacctatgacttgttttaggctataaaaaggcttgga 13721398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 16684285 - 16684331
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  16684285 acttccaaattacctatgacttgttttaggctataaaaaggcttgga 16684331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 40693021 - 40693061
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  40693021 acttccaaattacctatgacttgttttaggctataaaaagg 40693061  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 55612424 - 55612463
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaag 181  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  55612424 acttccaaattacctatgacttgttttaggctataaaaag 55612463  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 21450171 - 21450254
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||| |||||||||||||||||          |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  21450171 ttttggacggttttgaatgaaaaacacgttttccttgacttccaaattacctatgacttgttttaggctataaaaaggtttgga 21450254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 44207630 - 44207668
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaa 180  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  44207630 acttccaaattatctatgacttgttttaggctataaaaa 44207668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 8486548 - 8486588
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  8486548 acttccaaattacctatgacttgttttaggctataaaaagg 8486588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 48062274 - 48062234
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  48062274 acttccaaattacctatgacttgttttaggctataaaaagg 48062234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 49327356 - 49327396
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  49327356 acttccaaattacctatgacttgttttaggctataaaaagg 49327396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 16482952 - 16482913
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaag 181  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  16482952 acttccaaattacctatgacttgttttaggctataaaaag 16482913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 47374807 - 47374846
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaag 181  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  47374807 acttccaaattacctatgacttgttttaggctataaaaag 47374846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 30389007 - 30388961
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| |||||| |||||||| |||||||||||| |||||    
T  30389007 acttccaaattacctatgagttgttttaggctataaaaaggcttgga 30388961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 15113387 - 15113430
Alignment:
Q  145 tccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  15113387 tccaaattatctatgacttgttttaggctataaaaaggtttgga 15113430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 41961787 - 41961745
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtt 184  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  41961787 acttccaaattacctatgacttgttttaggctataaaaaggtt 41961745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 43333908 - 43333862
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  43333908 acttccaaattacctatgacttgttttaggctataaaaaggcttgga 43333862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 5464424 - 5464462
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaa 180  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  5464424 acttccaaattacctatgacttgttttaggctataaaaa 5464462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 34948612 - 34948535
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    ||||||||| |||||||||||||||||          |||||||||| | ||||||||||||||| ||||||||||||    
T  34948612 ttttggacggttttgaatgaaaaacacgttttccttgacttccaaatgacctatgacttgttttaggctataaaaagg 34948535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 10223207 - 10223253
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10223207 acttccaaattacctatgacttgttttaggctataaaaaggtttgga 10223253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 3475269 - 3475352
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||| |||||||||||||||||          |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  3475269 ttttggacggttttgaatgaaaaacacgttttccttgacttccaaattacctatgacttgttttaggctataaaaaggcttgga 3475352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 18272399 - 18272316
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||| |||||||||||||||||          |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  18272399 ttttggacggttttgaatgaaaaacacgttttcattgacttccaaattacctatgacttgttttaggctataaaaaggcttgga 18272316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 18277053 - 18276970
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||| |||||||||||||||||          |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  18277053 ttttggacggttttgaatgaaaaacacgttttcattgacttccaaattacctatgacttgttttaggctataaaaaggcttgga 18276970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 39598342 - 39598259
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||| |||||||||||||||||          |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  39598342 ttttggacggttttgaatgaaaaacacgttttccttgacttccaaattacctatgacttgttttaggctataaaaaggcttgga 39598259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 7564619 - 7564665
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||| | ||||||||||||||| ||||||||||||||||||    
T  7564619 acttccaaatgacctatgacttgttttaggctataaaaaggtttgga 7564665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 29946808 - 29946854
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  29946808 acttccaaattacctatgacttgttttaggctataaaaaggcttgga 29946854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 12524948 - 12524994
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    ||||||||||||  |||||||||||||| |||||||||||| |||||    
T  12524948 acttccaaattacttatgacttgttttaggctataaaaaggcttgga 12524994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 42190640 - 42190600
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  42190640 acttccaaattatctatgacttgttttaggctataaaaagg 42190600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 24830884 - 24830807
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    ||||||||| ||||||||||||||||||         |||| ||||||| ||||||||||||||| ||||||||||||    
T  24830884 ttttggacggttttgaatgaaaaacacattttccttgactttcaaattacctatgacttgttttaggctataaaaagg 24830807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 11767 - 11813
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||| | |||||||||||| |||||    
T  11767 acttccaaattacctatgacttgtttaaggctataaaaaggcttgga 11813  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 23420993 - 23421037
Alignment:
Q  144 ttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||| ||||||||| ||||| |||||||||||| |||||    
T  23420993 ttccaaattacctatgactttttttaggctataaaaaggcttgga 23421037  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 7255432 - 7255478
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  7255432 acttccaaattacctatgacttgttttaggctataaaaaggcttgga 7255478  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 26792087 - 26792041
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  26792087 acttccaaattacctatgacttgttttaggctataaaaaggcttgga 26792041  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 29332324 - 29332370
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  29332324 acttccaaattacctatgacttgttttaggctataaaaaggcttgga 29332370  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 43749234 - 43749280
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  43749234 acttccaaattacctatgacttgttttaggctataaaaaggcttgga 43749280  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 35585066 - 35585141
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaa 180  Q
    ||||||||| |||||||||||||||||          |||||||||||| ||||||||||||||| ||||||||||    
T  35585066 ttttggacggttttgaatgaaaaacacgttttccttgacttccaaattacctatgacttgttttaggctataaaaa 35585141  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 15032584 - 15032630
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| ||||||||||||||| ||||||||| || |||||    
T  15032584 acttccaaattacctatgacttgttttaggctataaaatggcttgga 15032630  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 29739204 - 29739281
Alignment:
Q  105 ttttggacgtttttgaatgaaaaacacannnnnnnnaacttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    ||||||||| |||||||||||||||||          |||||||||||| ||||||||||||||| | ||||||||||    
T  29739204 ttttggacggttttgaatgaaaaacacgttttccttgacttccaaattacctatgacttgttttaggttataaaaagg 29739281  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 34949623 - 34949577
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaaggtttgga 188  Q
    |||||||||||| |||||||||||||||  ||||||||||| |||||    
T  34949623 acttccaaattacctatgacttgttttagactataaaaaggcttgga 34949577  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 480410 - 480370
Alignment:
Q  142 acttccaaattatctatgacttgttttaagctataaaaagg 182  Q
    ||||| |||||| ||||||||||||||| ||||||||||||    
T  480410 acttctaaattacctatgacttgttttaggctataaaaagg 480370  T

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