View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_89 (Length: 292)
Name: NF1242_low_89
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_89 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 57 - 292
Target Start/End: Original strand, 26541835 - 26542070
Alignment:
| Q |
57 |
atcttaatcctttacaatgttcacatgccatgtgaaatttcaatatccaaaatttatctcaaaacctttatcactttaattggtgttcaaccgtccattt |
156 |
Q |
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| T |
26541835 |
atcttaatcctttacaatgttcacgtgccatgtgaaatttaaatatccaaaatttatctcaaaacctttatcactttaattggtgttcaaccgtccattt |
26541934 |
T |
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| Q |
157 |
atcaacataagttccatattttcttaacatttcttccaccacaccttaattctcttcaacttaaaaatcaaactagtccaaaatatttatagattttcca |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26541935 |
atcaacataagttccatattttcttaacatttcttccaccacaccttaattctcttcaacttaaaaatcaaactagtccaaaatatttatagattttcca |
26542034 |
T |
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| Q |
257 |
ctaactctttcattctagtttcaattcttctcgacc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26542035 |
ctaactctttcattctagtttcaattcttctcgacc |
26542070 |
T |
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