View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_91 (Length: 290)

Name: NF1242_low_91
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_91
NF1242_low_91
[»] chr2 (23 HSPs)
chr2 (30-208)||(41298607-41298784)
chr2 (235-284)||(11540069-11540118)
chr2 (233-284)||(63023-63074)
chr2 (233-284)||(4355821-4355872)
chr2 (233-284)||(32418223-32418274)
chr2 (233-284)||(38008380-38008431)
chr2 (233-284)||(42192306-42192357)
chr2 (230-284)||(4808945-4808999)
chr2 (233-275)||(5560979-5561021)
chr2 (233-275)||(13399497-13399539)
chr2 (233-275)||(44220074-44220116)
chr2 (233-274)||(4809308-4809349)
chr2 (240-284)||(649593-649637)
chr2 (233-284)||(38008016-38008068)
chr2 (233-272)||(13399849-13399888)
chr2 (233-284)||(33920678-33920729)
chr2 (233-284)||(43216138-43216189)
chr2 (242-284)||(4356194-4356236)
chr2 (233-275)||(20128166-20128208)
chr2 (239-273)||(31797212-31797246)
chr2 (233-284)||(11539703-11539755)
chr2 (233-284)||(16175778-16175830)
chr2 (233-284)||(20127802-20127854)
[»] chr4 (20 HSPs)
chr4 (230-284)||(46737081-46737135)
chr4 (233-284)||(28465147-28465198)
chr4 (233-284)||(6617091-6617142)
chr4 (233-284)||(14440257-14440308)
chr4 (233-284)||(34789448-34789499)
chr4 (233-284)||(35193374-35193425)
chr4 (233-284)||(45838613-45838664)
chr4 (233-284)||(54440998-54441049)
chr4 (233-284)||(56077753-56077804)
chr4 (233-275)||(14439903-14439945)
chr4 (233-284)||(19528935-19528987)
chr4 (233-284)||(12593452-12593503)
chr4 (230-272)||(26974670-26974713)
chr4 (233-284)||(28465510-28465561)
chr4 (233-284)||(33689895-33689945)
chr4 (233-284)||(34807568-34807619)
chr4 (239-273)||(40160171-40160205)
chr4 (232-284)||(24851893-24851946)
chr4 (242-282)||(16214933-16214973)
chr4 (233-284)||(21034301-21034353)
[»] chr6 (7 HSPs)
chr6 (233-284)||(31574154-31574205)
chr6 (233-284)||(5114534-5114585)
chr6 (233-284)||(5120898-5120949)
chr6 (233-284)||(24640614-24640665)
chr6 (233-275)||(28636625-28636667)
chr6 (233-275)||(29891509-29891551)
chr6 (233-284)||(25472441-25472493)
[»] chr3 (35 HSPs)
chr3 (233-284)||(38535724-38535775)
chr3 (233-275)||(330265-330307)
chr3 (230-284)||(43678710-43678764)
chr3 (234-284)||(52236882-52236932)
chr3 (234-275)||(40838727-40838768)
chr3 (235-275)||(52375762-52375802)
chr3 (233-284)||(329912-329963)
chr3 (233-284)||(40839081-40839132)
chr3 (233-284)||(43678361-43678412)
chr3 (233-284)||(46013488-46013539)
chr3 (233-284)||(49720790-49720841)
chr3 (233-284)||(55389671-55389722)
chr3 (233-267)||(34104721-34104755)
chr3 (234-284)||(40275524-40275574)
chr3 (233-275)||(51828969-51829011)
chr3 (239-284)||(50662847-50662892)
chr3 (233-284)||(41998295-41998347)
chr3 (233-284)||(51828605-51828657)
chr3 (233-284)||(2044337-2044388)
chr3 (233-284)||(38535375-38535426)
chr3 (233-284)||(44676901-44676952)
chr3 (233-284)||(49951612-49951663)
chr3 (233-284)||(49951975-49952026)
chr3 (233-284)||(51828023-51828074)
chr3 (233-284)||(52237246-52237297)
chr3 (240-275)||(52375402-52375437)
chr3 (234-284)||(16689424-16689474)
chr3 (233-275)||(32730464-32730506)
chr3 (233-275)||(32730818-32730860)
chr3 (233-284)||(14654620-14654669)
chr3 (233-284)||(16701218-16701272)
chr3 (233-284)||(30513788-30513839)
chr3 (233-273)||(44676549-44676589)
chr3 (233-284)||(46013851-46013903)
chr3 (233-284)||(51473284-51473336)
[»] chr7 (17 HSPs)
chr7 (234-284)||(5333946-5333996)
chr7 (233-284)||(7732554-7732605)
chr7 (233-284)||(16917779-16917830)
chr7 (233-284)||(25637627-25637678)
chr7 (234-284)||(2758128-2758178)
chr7 (230-284)||(28687925-28687979)
chr7 (233-284)||(35161230-35161282)
chr7 (233-284)||(7732916-7732967)
chr7 (233-284)||(9181598-9181649)
chr7 (233-284)||(14311716-14311767)
chr7 (233-284)||(16081365-16081416)
chr7 (233-284)||(16081728-16081779)
chr7 (233-267)||(5745722-5745756)
chr7 (230-284)||(28687659-28687713)
chr7 (239-284)||(5334254-5334299)
chr7 (233-273)||(9394159-9394199)
chr7 (233-284)||(26026383-26026435)
[»] chr1 (20 HSPs)
chr1 (234-284)||(8230071-8230121)
chr1 (233-272)||(1837583-1837622)
chr1 (233-284)||(4080087-4080138)
chr1 (233-284)||(16298748-16298799)
chr1 (233-284)||(21938629-21938680)
chr1 (233-284)||(30786838-30786889)
chr1 (233-284)||(39485131-39485182)
chr1 (233-284)||(52335939-52335990)
chr1 (234-284)||(2868138-2868188)
chr1 (233-275)||(16299111-16299153)
chr1 (235-267)||(2867994-2868026)
chr1 (239-275)||(45048230-45048266)
chr1 (233-284)||(443980-444031)
chr1 (233-272)||(9992233-9992272)
chr1 (233-267)||(23340266-23340300)
chr1 (233-284)||(34555809-34555862)
chr1 (233-267)||(44954655-44954689)
chr1 (233-281)||(1744395-1744444)
chr1 (233-284)||(10278614-10278666)
chr1 (235-284)||(37421226-37421277)
[»] chr8 (14 HSPs)
chr8 (233-284)||(9796792-9796843)
chr8 (233-284)||(15255919-15255970)
chr8 (233-284)||(41260337-41260388)
chr8 (233-284)||(41260690-41260741)
chr8 (233-275)||(599927-599969)
chr8 (234-284)||(7911046-7911096)
chr8 (230-272)||(34799509-34799551)
chr8 (240-284)||(5731248-5731292)
chr8 (233-284)||(599598-599649)
chr8 (233-284)||(26252875-26252926)
chr8 (233-267)||(16578525-16578559)
chr8 (242-284)||(18674214-18674256)
chr8 (239-275)||(5730892-5730928)
chr8 (233-284)||(18049656-18049708)
[»] chr5 (9 HSPs)
chr5 (233-284)||(28290073-28290124)
chr5 (233-284)||(38901069-38901120)
chr5 (234-284)||(4966882-4966932)
chr5 (239-284)||(18149799-18149844)
chr5 (240-284)||(15029745-15029789)
chr5 (236-284)||(16752648-16752696)
chr5 (233-284)||(38900710-38900761)
chr5 (233-275)||(21371125-21371167)
chr5 (233-284)||(19291422-19291474)
[»] scaffold0712 (1 HSPs)
scaffold0712 (230-284)||(6458-6512)
[»] scaffold0709 (1 HSPs)
scaffold0709 (230-284)||(6476-6530)
[»] scaffold0025 (1 HSPs)
scaffold0025 (233-272)||(78395-78434)
[»] scaffold0097 (1 HSPs)
scaffold0097 (233-284)||(46332-46384)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 41298607 - 41298784
Alignment:
Q  30 tcaataaccaatcacaacgcctcctttaccgaagaaatagaacttgataaaagatgaagtgtgagggaatagnnnnnnnnnnccttcataacgatgcact 129  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||          | ||||||||||||||||    
T  41298607 tcaataaccaatcacaacgccacctttacagaagaaatagaacttgataaaagatgaagtgcgagggaatagttttttttttc-ttcataacgatgcact 41298705  T
Q  130 atggatagataaatttaccacagttggtgatgcagtacatagatgtatcgcgagtgtgagttaaaaactcatattatat 208  Q
    | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41298706 acggatagataaatttaccacagctggtgatgcagtacatagatgtatcgcgagtgtgagttaaaaactcatattatat 41298784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 11540069 - 11540118
Alignment:
Q  235 atatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  11540069 atatgactaaaactgcaaaaaacatatagtttatggacgattttgttcga 11540118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 63074 - 63023
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  63074 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 63023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 4355872 - 4355821
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  4355872 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 4355821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 32418274 - 32418223
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||| |||||||||| ||||||| || |||||    
T  32418274 agatatgactaaaactgcaaaaaatatatagtttagggacgattttgttcga 32418223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 38008380 - 38008431
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  38008380 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 38008431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 42192357 - 42192306
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  42192357 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 42192306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 4808999 - 4808945
Alignment:
Q  230 ggaagatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||| |||||||||| |||||||||||||||||| ||||||| || |||||    
T  4808999 ggaagataggactaaaactacaaaaaacatatagtttatggacgattttgttcga 4808945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 5560979 - 5561021
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  5560979 agataggactaaaactgcaaaaaacatatagtttagggacgat 5561021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 13399539 - 13399497
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  13399539 agataggactaaaactgcaaaaaacatatagtttagggacgat 13399497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 44220074 - 44220116
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  44220074 agatatgactaaaactacaaaaaacatatagtttagggacgat 44220116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 4809308 - 4809349
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacga 274  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  4809308 agataggactaaaactgcaaaaaacatatagtttaaggacga 4809349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 649637 - 649593
Alignment:
Q  240 actaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||||| ||||||| || |||||    
T  649637 actaaaactgcaaaaaacatatagtttagggacgattttgttcga 649593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 38008068 - 38008016
Alignment:
Q  233 agatatgactaaaactgcaa-aaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| || |||||    
T  38008068 agatatgactaaaactgcaaaaaaacatatagtttagggacgattttgttcga 38008016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 13399849 - 13399888
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggac 272  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  13399849 agatatgactaaaactgcaaaaaatatatagtttaaggac 13399888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 33920729 - 33920678
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||| || |||||    
T  33920729 agataggactaaaactgcaaaaatcatatagtttagggacgattttgttcga 33920678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 43216138 - 43216189
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| |||||||||| ||||||| || |||||    
T  43216138 agataggactaaaactgcaaaaaatatatagtttagggacgattttgttcga 43216189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 4356194 - 4356236
Alignment:
Q  242 taaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||| ||||||| || |||||    
T  4356194 taaaactgcaaaaaacatatagtttaaggacgattttgttcga 4356236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 20128166 - 20128208
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| |||||||| |||||||||||||||||||| |||||||    
T  20128166 agataggactaaaattgcaaaaaacatatagtttaaggacgat 20128208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 31797212 - 31797246
Alignment:
Q  239 gactaaaactgcaaaaaacatatagtttacggacg 273  Q
    ||||||||||||||||||||||||||||| |||||    
T  31797212 gactaaaactgcaaaaaacatatagtttagggacg 31797246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 11539755 - 11539703
Alignment:
Q  233 agatatgactaaaactgcaaaaaa-catatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| || |||||    
T  11539755 agataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcga 11539703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 16175778 - 16175830
Alignment:
Q  233 agatatgactaaaactgcaaaa-aacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||| || |||||    
T  16175778 agataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcga 16175830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 20127854 - 20127802
Alignment:
Q  233 agatatgactaaaactgcaaaaaa-catatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| || |||||    
T  20127854 agataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcga 20127802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 46737081 - 46737135
Alignment:
Q  230 ggaagatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  46737081 ggaagatatgactaaaactgcaaaaaacatatagtttagggacgattttgttcga 46737135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 28465198 - 28465147
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  28465198 agatatgactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 28465147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 6617091 - 6617142
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| |||||||||| ||||||| ||||||||    
T  6617091 agataggactaaaactgcaaaaaaaatatagtttagggacgattttattcga 6617142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 14440257 - 14440308
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||||||||| ||| ||| || |||||    
T  14440257 agatatgactaaaactgcaaaaaacatatagtttaaggatgattttgttcga 14440308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 34789499 - 34789448
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  34789499 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 34789448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 35193425 - 35193374
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  35193425 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 35193374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 45838664 - 45838613
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  45838664 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 45838613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 54440998 - 54441049
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  54440998 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 54441049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 56077753 - 56077804
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  56077753 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 56077804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 14439945 - 14439903
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  14439945 agataggactaaaactgcaaaaaacatatagtttagggacgat 14439903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 19528987 - 19528935
Alignment:
Q  233 agatatgactaaaactgcaaaaaa-catatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  19528987 agataggactaaaactgcaaaaaaacatatagtttagggacgattttattcga 19528935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 12593452 - 12593503
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| ||||||||||| |||||| || |||||    
T  12593452 agataggactaaaactgcaaaaaatatatagtttacagacgattttgttcga 12593503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 26974670 - 26974713
Alignment:
Q  230 ggaagatatgactaaaactgc-aaaaaacatatagtttacggac 272  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  26974670 ggaagatatgactaaaactgcaaaaaaacatatagtttagggac 26974713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 28465510 - 28465561
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||| |||||||||||||||||||| ||||||| || |||||    
T  28465510 agataggactaaaattgcaaaaaacatatagtttaaggacgattttgttcga 28465561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 33689945 - 33689895
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| || |||||    
T  33689945 agatatgactaaaactgca-aaaacatatagtttaaggacgattttgttcga 33689895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 34807568 - 34807619
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||| |||||||||||||||| ||||||| || |||||    
T  34807568 agataggactaaaactgccaaaaacatatagtttaaggacgattttgttcga 34807619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 40160205 - 40160171
Alignment:
Q  239 gactaaaactgcaaaaaacatatagtttacggacg 273  Q
    ||||||||||||||||||||||||||||| |||||    
T  40160205 gactaaaactgcaaaaaacatatagtttagggacg 40160171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 24851893 - 24851946
Alignment:
Q  232 aagatatgactaaaactgcaaaa-aacatatagtttacggacgatattattcga 284  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||| || |||||    
T  24851893 aagataggactaaaactgcaaaaaaacatatagtttagggacgattttgttcga 24851946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 16214933 - 16214973
Alignment:
Q  242 taaaactgcaaaaaacatatagtttacggacgatattattc 282  Q
    ||||||||||||||| |||||||||| ||||||| ||||||    
T  16214933 taaaactgcaaaaaatatatagtttaaggacgattttattc 16214973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 21034353 - 21034301
Alignment:
Q  233 agatatgactaaaactgcaaaaaa-catatagtttacggacgatattattcga 284  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||| || |||||    
T  21034353 agatatgactaaaactgtaaaaaaacatatagtttaaggacgattttgttcga 21034301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 31574154 - 31574205
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  31574154 agatatgactaaaactgcaaaaaacatatagtttagggacgattttgttcga 31574205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 5114585 - 5114534
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  5114585 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 5114534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 5120898 - 5120949
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  5120898 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 5120949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 24640614 - 24640665
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  24640614 agataagactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 24640665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 28636625 - 28636667
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  28636625 agataagactaaaactgcaaaaaacatatagtttaaggacgat 28636667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 29891509 - 29891551
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  29891509 agataggactaaaactgcaaaaaacatatagtttaaggacgat 29891551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 25472441 - 25472493
Alignment:
Q  233 agatatgactaaaactgcaaaa-aacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||| || |||||    
T  25472441 agataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcga 25472493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 38535724 - 38535775
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  38535724 agataggactaaaactgcaaaaaacatatagtttagggacgattttattcga 38535775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 330265 - 330307
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  330265 agatatgactaaaactgcaaaaaacatatagtttagggacgat 330307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 43678710 - 43678764
Alignment:
Q  230 ggaagatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||| || |||||    
T  43678710 ggaagatatgactgaaactgcaaaaaacatatagtttatggacgattttgttcga 43678764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 52236932 - 52236882
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  52236932 gatatgactaaaactgcaaaaaacatatagtttagggacgattttgttcga 52236882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 40838768 - 40838727
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  40838768 gatatgactaaaactgcaaaaaacatatagtttatggacgat 40838727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 52375762 - 52375802
Alignment:
Q  235 atatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  52375762 atatgactaaaactgcaaaaaacatatagtttatggacgat 52375802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 329963 - 329912
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  329963 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 329912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 40839081 - 40839132
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  40839081 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 40839132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 43678412 - 43678361
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  43678412 agataagactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 43678361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 46013539 - 46013488
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||||||| |||| ||||||| || |||||    
T  46013539 agatatgactaaaactgcaaaaaacatatactttagggacgattttgttcga 46013488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 49720790 - 49720841
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  49720790 agataagactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 49720841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 55389722 - 55389671
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  55389722 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 55389671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 34104755 - 34104721
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagttta 267  Q
    |||||||||||||||||||||||||||||||||||    
T  34104755 agatatgactaaaactgcaaaaaacatatagttta 34104721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 40275524 - 40275574
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||||||||  |||||| || |||||    
T  40275524 gatatgactaaaactgcaaaaaacatatagtttagagacgattttgttcga 40275574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 51828969 - 51829011
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  51828969 agataggactaaaactgcaaaaaacatatagtttaaggacgat 51829011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 50662847 - 50662892
Alignment:
Q  239 gactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||| ||||||| || |||||    
T  50662847 gactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 50662892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 41998347 - 41998295
Alignment:
Q  233 agatatgactaaaactgcaa-aaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| || |||||    
T  41998347 agatatgactaaaactgcaaaaaaacatatagtttaaggacgattttgttcga 41998295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 51828657 - 51828605
Alignment:
Q  233 agatatgactaaaactgcaaaaaa-catatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| || |||||    
T  51828657 agataggactaaaactgcaaaaaaacatatagtttacggacgattttgttcga 51828605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 2044388 - 2044337
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||| ||||||||||||| |||| ||||||| || |||||    
T  2044388 agatatgactaaaactccaaaaaacatataatttatggacgattttgttcga 2044337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 38535426 - 38535375
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||| |||||||||||||||||||||||| ||||||| || |||||    
T  38535426 agataggactgaaactgcaaaaaacatatagtttaaggacgattttgttcga 38535375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 44676901 - 44676952
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||| |||||||||||||||||||| ||||||| || |||||    
T  44676901 agataggactaaaattgcaaaaaacatatagtttaaggacgattttgttcga 44676952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 49951663 - 49951612
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||| |||||||||||||||||||| ||||||| || |||||    
T  49951663 agataggactaaaattgcaaaaaacatatagtttaaggacgattttgttcga 49951612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 49951975 - 49952026
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||| |||||||  |||||| || |||||    
T  49951975 agatatgactaaaactgcaaaaaacatgtagtttaatgacgattttgttcga 49952026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 51828074 - 51828023
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||| |||||||||||||||||||| ||||||| || |||||    
T  51828074 agataggactaaaaatgcaaaaaacatatagtttagggacgattttgttcga 51828023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 52237246 - 52237297
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||||||||| |||| ||||||| || |||||    
T  52237246 agataggactaaaactgcaaaaaacatataatttagggacgattttgttcga 52237297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 52375437 - 52375402
Alignment:
Q  240 actaaaactgcaaaaaacatatagtttacggacgat 275  Q
    |||||||||||||||||||||||||||| |||||||    
T  52375437 actaaaactgcaaaaaacatatagtttagggacgat 52375402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 16689474 - 16689424
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||| |||||||||||||||||||||||| |||| ||||||| || |||||    
T  16689474 gataggactaaaactgcaaaaaacatatattttatggacgattttgttcga 16689424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 32730506 - 32730464
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  32730506 agatacgattaaaactgcaaaaaacatatagtttagggacgat 32730464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 32730818 - 32730860
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  32730818 agataggattaaaactgcaaaaaacatatagtttaaggacgat 32730860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 14654620 - 14654669
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||||  |||||||||||||||| || |||||    
T  14654620 agataggactaaaactgcaaaaaac--atagtttacggacgattttgttcga 14654669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 16701218 - 16701272
Alignment:
Q  233 agatatgactaaaactgc---aaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||| || |||||    
T  16701218 agatatgactaaaactgcaaaaaaaaacatatagtttaaggacgattttgttcga 16701272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 30513839 - 30513788
Alignment:
Q  233 agatatgactaaaactgca-aaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||| ||||||||||||||||  |||||| ||||||||    
T  30513839 agatatgactaaaactgcagaaaaacatatagttta-agacgattttattcga 30513788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 44676589 - 44676549
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacg 273  Q
    ||||| ||||||| ||||||||||||||||||||| |||||    
T  44676589 agataggactaaagctgcaaaaaacatatagtttagggacg 44676549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 46013851 - 46013903
Alignment:
Q  233 agatatgactaaaactgcaaaa-aacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||| || |||||    
T  46013851 agataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcga 46013903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 51473284 - 51473336
Alignment:
Q  233 agatatgactaaaactgcaaaa-aacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||| || |||||    
T  51473284 agataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcga 51473336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 5333996 - 5333946
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  5333996 gatatgactaaaactgcaaaaaacatatagtttagggacgattttgttcga 5333946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 7732605 - 7732554
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  7732605 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 7732554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 16917830 - 16917779
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||||||||| ||| ||| || |||||    
T  16917830 agatatgactaaaactgcaaaaaacatatagtttaaggaggattttgttcga 16917779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 25637627 - 25637678
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  25637627 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 25637678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 2758128 - 2758178
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||| ||||||||||||||||||||| ||||||| || |||||    
T  2758128 gatatgactaaacctgcaaaaaacatatagtttatggacgattttgttcga 2758178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 28687925 - 28687979
Alignment:
Q  230 ggaagatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||| || |||||    
T  28687925 ggaagataggactaaaagtgcaaaaaacatatagtttagggacgattttgttcga 28687979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 35161230 - 35161282
Alignment:
Q  233 agatatgactaaaactgc-aaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| || |||||    
T  35161230 agatatgactaaaactgcaaaaaaacatatagtttagggacgattttgttcga 35161282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 7732916 - 7732967
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||| |||||||||||||||||||| ||||||| || |||||    
T  7732916 agataggactaaaattgcaaaaaacatatagtttaaggacgattttgttcga 7732967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 9181649 - 9181598
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| |||||||||| ||||||| || |||||    
T  9181649 agataggactaaaactgcaaaaaaaatatagtttaaggacgattttgttcga 9181598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 14311716 - 14311767
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||||||||||||||  |||||| || |||||    
T  14311716 agataagactaaaactgcaaaaaacatatagtttaaagacgattttgttcga 14311767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 16081416 - 16081365
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||||| |||||||| ||||||| || |||||    
T  16081416 agataggactaaaactgcaaaaaacaaatagtttaaggacgattttgttcga 16081365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 16081728 - 16081779
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||| || |||||    
T  16081728 agataggactaaaactgcaaaaaacatatagtttagggatgattttgttcga 16081779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 5745756 - 5745722
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagttta 267  Q
    ||||| |||||||||||||||||||||||||||||    
T  5745756 agataagactaaaactgcaaaaaacatatagttta 5745722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 28687713 - 28687659
Alignment:
Q  230 ggaagatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||| ||||| |||||||||||| |||||||||| ||||||| || |||||    
T  28687713 ggaagataggactagaactgcaaaaaaaatatagtttaaggacgattttgttcga 28687659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 5334254 - 5334299
Alignment:
Q  239 gactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||| |||||||||| ||||||| || |||||    
T  5334254 gactaaaactgcaaaaaatatatagtttagggacgattttgttcga 5334299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 9394159 - 9394199
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacg 273  Q
    ||||| |||||||||||||||||| |||||||||| |||||    
T  9394159 agataggactaaaactgcaaaaaatatatagtttagggacg 9394199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 26026435 - 26026383
Alignment:
Q  233 agatatgactaaaactgcaaaaaa-catatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| || |||||    
T  26026435 agataagactaaaactgcaaaaaaacatatagtttatggacgattttgttcga 26026383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 8230071 - 8230121
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  8230071 gatatgactaaaactgcaaaaaacatatagtttagggacgattttgttcga 8230121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 1837622 - 1837583
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggac 272  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  1837622 agatatgactaaaactgcaaaaaacatatagtttagggac 1837583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 4080138 - 4080087
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| || |||||    
T  4080138 agatatgactaaaactgtaaaaaacatatagtttagggacgattttgttcga 4080087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 16298799 - 16298748
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  16298799 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 16298748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 21938680 - 21938629
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  21938680 agataggactaaaactgcaaaaaacatatagtttatggacgattttgttcga 21938629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 30786889 - 30786838
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  30786889 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 30786838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 39485182 - 39485131
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  39485182 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 39485131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 52335939 - 52335990
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||| |||||||||| ||||||| || |||||    
T  52335939 agatatgactaaaactgcaaaaaaaatatagtttagggacgattttgttcga 52335990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 2868138 - 2868188
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||||| || ||||||| || |||||    
T  2868138 gatatgactaaaactgcaaaaaacatatagtgtagggacgattttgttcga 2868188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 16299111 - 16299153
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  16299111 agataggactaaaactgcaaaaaacatatagtttaaggacgat 16299153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 2868026 - 2867994
Alignment:
Q  235 atatgactaaaactgcaaaaaacatatagttta 267  Q
    |||||||||||||||||||||||||||||||||    
T  2868026 atatgactaaaactgcaaaaaacatatagttta 2867994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 45048266 - 45048230
Alignment:
Q  239 gactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||||||||||||||||||||||||||| |||||||    
T  45048266 gactaaaactgcaaaaaacatatagtttatggacgat 45048230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 443980 - 444031
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| | ||||| || |||||    
T  443980 agataggactaaaactgcaaaaaacatatagtttaggaacgattttgttcga 444031  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 9992272 - 9992233
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggac 272  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  9992272 agataggactaaaactgcaaaaaacatatagtttaaggac 9992233  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 23340300 - 23340266
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagttta 267  Q
    |||||||||||||||||||||||| ||||||||||    
T  23340300 agatatgactaaaactgcaaaaaatatatagttta 23340266  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 34555809 - 34555862
Alignment:
Q  233 agatatgactaaaactgc--aaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||| || |||||    
T  34555809 agatatgactaaaactgcaaaaaaaacatatagtttaaggacgattttgttcga 34555862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 44954655 - 44954689
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagttta 267  Q
    ||||| |||||||||||||||||||||||||||||    
T  44954655 agataggactaaaactgcaaaaaacatatagttta 44954689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 1744444 - 1744395
Alignment:
Q  233 agatatgactaaaactgcaa-aaaacatatagtttacggacgatattatt 281  Q
    |||||||||||||||||||| |||| |||||||||| ||||||| |||||    
T  1744444 agatatgactaaaactgcaaaaaaatatatagtttagggacgattttatt 1744395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 10278666 - 10278614
Alignment:
Q  233 agatatgactaaaactgcaaaaaa-catatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| || |||||    
T  10278666 agataggactaaaactgcaaaaaaacatatagtttagggacgattttgttcga 10278614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 37421277 - 37421226
Alignment:
Q  235 atatgactaaaactgcaaaaaa--catatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||  ||||||||||| ||||||| || |||||    
T  37421277 atatgactaaaactgcaaaaaaaacatatagtttagggacgattttgttcga 37421226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 9796843 - 9796792
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||||||||| ||| ||| || |||||    
T  9796843 agatatgactaaaactgcaaaaaacatatagtttatggatgattttgttcga 9796792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 15255970 - 15255919
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  15255970 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 15255919  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 41260388 - 41260337
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  41260388 agataagactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 41260337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 41260690 - 41260741
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  41260690 agataggactaaaactgcaaaaaacatatagtttagggacgattttgttcga 41260741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 599927 - 599969
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  599927 agataagactaaaactgcaaaaaacatatagtttaaggacgat 599969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 7911046 - 7911096
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||| |||||||||| ||||||| || |||||    
T  7911046 gatatgactaaaactgcaaaaaatatatagtttagggacgattttgttcga 7911096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 34799509 - 34799551
Alignment:
Q  230 ggaagatatgactaaaactgcaaaaaacatatagtttacggac 272  Q
    |||||||| ||||||||||||||||||||||||||||| ||||    
T  34799509 ggaagataggactaaaactgcaaaaaacatatagtttagggac 34799551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 5731248 - 5731292
Alignment:
Q  240 actaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||||| ||||||| || |||||    
T  5731248 actaaaactgcaaaaaacatatagtttatggacgattttgttcga 5731292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 599649 - 599598
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||||||| |||| ||| ||| || |||||    
T  599649 agatatgactaaaactgcaaaaaacatataatttagggatgattttgttcga 599598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 26252926 - 26252875
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||| || |||||    
T  26252926 agataggactaaaactgcacaaaacatatagtttagggacgattttgttcga 26252875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 16578525 - 16578559
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagttta 267  Q
    ||||| |||||||||||||||||||||||||||||    
T  16578525 agataggactaaaactgcaaaaaacatatagttta 16578559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 18674256 - 18674214
Alignment:
Q  242 taaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||| ||||||| || |||||    
T  18674256 taaaactgcaaaaaacatatagtttagggacgattttgttcga 18674214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 5730928 - 5730892
Alignment:
Q  239 gactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  5730928 gactaaaacagcaaaaaacatatagtttaaggacgat 5730892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 18049708 - 18049656
Alignment:
Q  233 agatatgactaaaactgcaaaaaa-catatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| || |||||    
T  18049708 agataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcga 18049656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 28290073 - 28290124
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| || |||||    
T  28290073 agataggactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 28290124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 38901069 - 38901120
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||| |||||||||||||||||||||||||||| ||||||| || |||||    
T  38901069 agatataactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 38901120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 4966932 - 4966882
Alignment:
Q  234 gatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||| |||||||||||||||| ||||||| || |||||    
T  4966932 gatatgactaaaactgctaaaaacatatagtttagggacgattttgttcga 4966882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 18149844 - 18149799
Alignment:
Q  239 gactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||||||||||||||||||||||||||| ||||||| || |||||    
T  18149844 gactaaaactgcaaaaaacatatagtttaaggacgattttgttcga 18149799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 15029745 - 15029789
Alignment:
Q  240 actaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||||||||||| ||||||| || |||||    
T  15029745 actaaaactgcaaaaaacatatagtttaaggacgattttgttcga 15029789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 16752696 - 16752648
Alignment:
Q  236 tatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||| ||||||||||||||||||||||||| ||||||| || |||||    
T  16752696 tatgacaaaaactgcaaaaaacatatagtttatggacgattttgttcga 16752648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 38900761 - 38900710
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||||||||| |||| ||||||| || |||||    
T  38900761 agataggactaaaactgcaaaaaacatataatttagggacgattttgttcga 38900710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 21371125 - 21371167
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggacgat 275  Q
    ||||| |||||||| |||||||||||||||||||| |||||||    
T  21371125 agataggactaaaattgcaaaaaacatatagtttagggacgat 21371167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 19291474 - 19291422
Alignment:
Q  233 agatatgactaaaactgcaaaaaa-catatagtttacggacgatattattcga 284  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| || |||||    
T  19291474 agataagactaaaactgcaaaaaaacatatagtttaaggacgattttgttcga 19291422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 6512 - 6458
Alignment:
Q  230 ggaagatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||| || |||||    
T  6512 ggaagataggactaaaactgcaaaaaacatataatttaaggacgattttgttcga 6458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 6530 - 6476
Alignment:
Q  230 ggaagatatgactaaaactgcaaaaaacatatagtttacggacgatattattcga 284  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||| || |||||    
T  6530 ggaagataggactaaaactgcaaaaaacatataatttaaggacgattttgttcga 6476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 78434 - 78395
Alignment:
Q  233 agatatgactaaaactgcaaaaaacatatagtttacggac 272  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  78434 agataggactaaaactgcaaaaaacatatagtttagggac 78395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 46384 - 46332
Alignment:
Q  233 agatatgactaaaactgcaa-aaaacatatagtttacggacgatattattcga 284  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||| || |||||    
T  46384 agatatgactaaaactgcaaaaaaacatatagtttagggatgattttgttcga 46332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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