View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_95 (Length: 287)
Name: NF1242_low_95
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 18045640 - 18045467
Alignment:
| Q |
99 |
ttatgcaggggaactgcctctagtaacttctatctatggagcttctgaagggttcatagctgcaaatgttaaccctgaacttccccctgaattggcaact |
198 |
Q |
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| T |
18045640 |
ttatgcaggggaactgcctctagtgacttctatctacggagcttctgaagggttcatagctgcaaatgttaaccctaaacttccccctgaatttgcaact |
18045541 |
T |
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| Q |
199 |
tatgtcgtgtttcctcaaaatggatactttgagttcattcctctcactcagcttaacaacgatggtactttcct |
272 |
Q |
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| T |
18045540 |
tatgccgtgtttcctcaaaatggatactttgagttcattcctctcactcagcttaacaacgatggtactttcct |
18045467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 13979875 - 13979615
Alignment:
| Q |
7 |
tatggtttgataccagagttgtttcctaatgctaaatacattttcggaatcatgagcgggtcaatggagcagtatataggaaaattcaggcattatgcag |
106 |
Q |
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| T |
13979875 |
tatggtttgttaccagagttgtttcctaatgcgaagtacatttatggaatcatgacggggtcgatggagccatatttaggaaagttgaggcactatgcag |
13979776 |
T |
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| Q |
107 |
gggaactgcctctagtaacttctatctatggagcttctgaagggttcatagctgcaaatgttaaccctgaacttccccctgaattggcaacttatgtcgt |
206 |
Q |
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| T |
13979775 |
gagagttacctttagtgacttctatctatggagcttctgaagggttcatagctgcaaatattaaccctaaacttccccttgaattggcaacctatgtttt |
13979676 |
T |
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| Q |
207 |
gtttcctcaaaatggatactttgagttcattcctctcactcagcttaacaacgatggtact |
267 |
Q |
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| T |
13979675 |
gtttcctcaaaatggatactttgagttcattcctctcacacaggttaagaatgagggtact |
13979615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 48367861 - 48367981
Alignment:
| Q |
132 |
ctatggagcttctgaagggttcatagctgcaaatgttaaccctgaacttccccctgaattggcaacttatgtcgtgtttcctcaaaatggatactttgag |
231 |
Q |
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| T |
48367861 |
ctatggagcttctgaagggtggattgctgcaaatgttaacccaaaaattccacctgaattggcaacttacgccgtgcttcctcaaattggttactttgag |
48367960 |
T |
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| Q |
232 |
ttcattcctctcactcagctt |
252 |
Q |
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| T |
48367961 |
ttcattcctctcacacagctt |
48367981 |
T |
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